Gm36500 Gene Detail

Summary

• Symbol
  Gm36500
• Name
  predicted gene, 36500

• Feature Type
  lncRNA gene
• IDs
  MGI:5595659
  NCBI Gene: 102640439
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:34313848-34321637 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  281 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595659	lncRNA gene	Chr13:34313848-34322452 (+)
129S1/SvImJ	ENSMUSG00200013208	lncRNA gene	Chr13:31513673-31517467 (+)
A/J	ENSMUSG00195036288	lncRNA gene	Chr13:30607932-30611728 (+)
AKR/J	ENSMUSG00220033293	lncRNA gene	Chr13:30397248-30401044 (+)
BALB/cJ	ENSMUSG00180008644	lncRNA gene	Chr13:30911768-30915563 (+)
C3H/HeJ	ENSMUSG00175013116	lncRNA gene	Chr13:30861019-30864814 (+)
C57BL/6NJ	ENSMUSG00215019642	lncRNA gene	Chr13:31037215-31041010 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035150	lncRNA gene	Chr13:30944513-30948298 (+)
CBA/J	ENSMUSG00210012140	lncRNA gene	Chr13:30873531-30877327 (+)
DBA/2J	ENSMUSG00185032298	lncRNA gene	Chr13:31692950-31696747 (+)
FVB/NJ	ENSMUSG00205037596	lncRNA gene	Chr13:30569632-30573426 (+)
JF1/MsJ	ENSUMUG00000035320	lncRNA gene	Chr13:31286272-31290037 (+)
LP/J	ENSMUSG00230015552	lncRNA gene	Chr13:41017381-41021176 (+)
NOD/ShiLtJ	ENSMUSG00190012258	lncRNA gene	Chr13:31094231-31098025 (+)
NZO/HlLtJ	ENSMUSG00225035450	lncRNA gene	Chr13:34828362-34832157 (+)
PWK/PhJ	ENSLUMG00010031010	lncRNA gene	Chr13:30124775-30128539 (+)
SPRET/EiJ	ENSMSPG00010027685	lncRNA gene	Chr13:30005524-30009307 (+)
WSB/EiJ	ENSIUOG00005030641	lncRNA gene	Chr13:30265254-30269074 (+)

Homology

• Gene Tree
  Gm36500
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm36500
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  7

• Ensembl
  ENSMUSG00000113883 (Evidence)
• NCBI Gene
  102640439

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113883	Ensembl Gene Model | MGI Sequence Detail	7790	C57BL/6J
transcript	ENSMUST00000325260	Ensembl | MGI Sequence Detail	2770	Not Applicable

References

• Summaries
  All 13

  Phenotypes 10
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm36500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119220	Chr13:34314567-34314589 (+)	730 bp