Gm36496 Gene Detail

Summary

• Symbol
  Gm36496
• Name
  predicted gene, 36496

• Feature Type
  lncRNA gene
• IDs
  MGI:5595655
  NCBI Gene: 102640433
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:25237504-25240220 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595655	lncRNA gene	Chr12:25237255-25240368 (-)
129S1/SvImJ	ENSMUSG00200024276	lncRNA gene	Chr12:16987560-16989155 (-)
A/J	ENSMUSG00195019855	lncRNA gene	Chr12:19719850-19721445 (-)
AKR/J	ENSMUSG00220027594	lncRNA gene	Chr12:17664295-17665890 (-)
BALB/cJ	ENSMUSG00180010775	lncRNA gene	Chr12:18662485-18664080 (-)
C3H/HeJ	ENSMUSG00175022929	lncRNA gene	Chr12:21713026-21714621 (-)
C57BL/6NJ	ENSMUSG00215005837	lncRNA gene	Chr12:18132837-18134432 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006381	lncRNA gene	Chr12:18522118-18523697 (-)
CBA/J	ENSMUSG00210007801	lncRNA gene	Chr12:18199233-18200828 (-)
DBA/2J	ENSMUSG00185015198	lncRNA gene	Chr12:20229203-20230798 (-)
FVB/NJ	ENSMUSG00205001773	lncRNA gene	Chr12:18298461-18300056 (-)
JF1/MsJ	ENSUMUG00000006327	lncRNA gene	Chr12:24439688-24441286 (-)
LP/J	ENSMUSG00230006888	lncRNA gene	Chr12:27197870-27199465 (-)
NOD/ShiLtJ	ENSMUSG00190014564	lncRNA gene	Chr12:17169453-17171048 (-)
NZO/HlLtJ	ENSMUSG00225034655	lncRNA gene	Chr12:29380958-29382553 (-)
PWK/PhJ	ENSLUMG00010004798	lncRNA gene	Chr12:18714207-18715805 (-)
SPRET/EiJ	ENSMSPG00010003250	lncRNA gene	Chr12:18989463-18991041 (-)
WSB/EiJ	ENSIUOG00005001736	lncRNA gene	Chr12:17858538-17860133 (-)

Homology

• Gene Tree
  Gm36496
  

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000120697 (Evidence)
• NCBI Gene
  102640433

Representative Sequences			Length	Strain/Species
genomic	102640433	NCBI Gene Model | MGI Sequence Detail	2717	C57BL/6J
transcript	XR_004937753	RefSeq | MGI Sequence Detail	2182	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36496:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115891	Chr12:25239660-25239672 (-)	554 bp
Tssr115890	Chr12:25239601-25239613 (-)	613 bp
Tssr115889	Chr12:25239579-25239596 (-)	632 bp
Tssr115888	Chr12:25239094-25239100 (-)	1,123 bp