Gm36485 Gene Detail

Summary

• Symbol
  Gm36485
• Name
  predicted gene, 36485

• Feature Type
  lncRNA gene
• IDs
  MGI:5595644
  NCBI Gene: 102640421
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:113235236-113239413 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595644	lncRNA gene	Chr9:113137199-113297624 (-)
129S1/SvImJ	ENSMUSG00200044985	lncRNA gene	Chr9:110320113-110334257 (-)
A/J	ENSMUSG00195045935	lncRNA gene	Chr9:109650104-109663867 (-)
AKR/J	ENSMUSG00220030381	lncRNA gene	Chr9:109972600-109986377 (-)
BALB/cJ	ENSMUSG00180034914	lncRNA gene	Chr9:110069908-110083669 (-)
C3H/HeJ	ENSMUSG00175048374	lncRNA gene	Chr9:110290944-110304711 (-)
C57BL/6NJ	ENSMUSG00215042757	lncRNA gene	Chr9:110179386-110193465 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035617	lncRNA gene	Chr9:109969238-109984551 (-)
CBA/J	ENSMUSG00210044920	lncRNA gene	Chr9:110004190-110017967 (-)
DBA/2J	ENSMUSG00185044083	lncRNA gene	Chr9:110340128-110353923 (-)
FVB/NJ	ENSMUSG00205050700	lncRNA gene	Chr9:110278456-110292219 (-)
JF1/MsJ	ENSUMUG00000055581	lncRNA gene	Chr9:110125600-110139360 (-)
LP/J	ENSMUSG00230050556	lncRNA gene	Chr9:110451966-110466094 (-)
NOD/ShiLtJ	ENSMUSG00190050330	lncRNA gene	Chr9:109934055-109947832 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010046024	lncRNA gene	Chr9:110126534-110140362 (-)
SPRET/EiJ	ENSMSPG00010023650	lncRNA gene	Chr9:111956118-111979492 (-)
WSB/EiJ	ENSIUOG00005048273	lncRNA gene	Chr9:109412097-109425843 (-)

Homology

• Gene Tree
  Gm36485
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  1

• Ensembl
  ENSMUSG00000111532 (Evidence)
• NCBI Gene
  102640421

Representative Sequences			Length	Strain/Species
genomic	102640421	NCBI Gene Model | MGI Sequence Detail	4178	C57BL/6J
transcript	XR_379907	RefSeq | MGI Sequence Detail	611	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;