Cdk6os1 Gene Detail

Summary

• Symbol
  Cdk6os1
• Name
  cyclin dependent kinase 6, opposite strand transcript 1
• Synonyms
  Gm36470

• Feature Type
  lncRNA gene
• IDs
  MGI:5595629
  NCBI Gene: 102640405
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:3339980-3393559 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  259 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595629	lncRNA gene	Chr5:3339980-3393559 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  CDK6-AS1, CDK6 antisense RNA 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CDK6-AS1, CDK6 antisense RNA 1
  
• Synonyms
  BALR-2
• Links
  HGNC:40141

  NCBI Gene ID: 101927497

  
  
• Chr Location
  chr7:92836367-92917188 (+)  GRCh38

---

• MGI Vertebrate Homology
  Cdk6os1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: CDK6-AS1

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  9
• Gene trapped
  9
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  5

• NCBI Gene
  102640405

Representative Sequences			Length	Strain/Species
genomic	102640405	NCBI Gene Model | MGI Sequence Detail	53580	C57BL/6J
transcript	NR_168894	RefSeq | MGI Sequence Detail	2096	ZRU/MplStud

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Cdk6os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49983	Chr5:3392403-3392410 (-)	1,152 bp