Gm36462 Gene Detail

Summary

• Symbol
  Gm36462
• Name
  predicted gene, 36462

• Feature Type
  lncRNA gene
• IDs
  MGI:5595621
  NCBI Gene: 102640393
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:172901847-172903950 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595621	lncRNA gene	Chr2:172901847-172904366 (-)
129S1/SvImJ	ENSMUSG00200040797	lncRNA gene	Chr2:169833942-169836043 (-)
A/J	ENSMUSG00195025492	lncRNA gene	Chr2:170162361-170164462 (-)
AKR/J	ENSMUSG00220037460	lncRNA gene	Chr2:169458039-169460140 (-)
BALB/cJ	ENSMUSG00180037877	lncRNA gene	Chr2:169599074-169601175 (-)
C3H/HeJ	ENSMUSG00175044570	lncRNA gene	Chr2:170368764-170370865 (-)
C57BL/6NJ	ENSMUSG00215034794	lncRNA gene	Chr2:169797658-169799759 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009113	lncRNA gene	Chr2:168698718-168700810 (-)
CBA/J	ENSMUSG00210045338	lncRNA gene	Chr2:170279026-170281127 (-)
DBA/2J	ENSMUSG00185026163	lncRNA gene	Chr2:169992598-169994699 (-)
FVB/NJ	ENSMUSG00205025987	lncRNA gene	Chr2:169049121-169051222 (-)
JF1/MsJ	ENSUMUG00000048295	lncRNA gene	Chr2:169678051-169680142 (-)
LP/J	ENSMUSG00230012671	lncRNA gene	Chr2:171570325-171572426 (-)
NOD/ShiLtJ	ENSMUSG00190046169	lncRNA gene	Chr2:169679192-169681283 (-)
NZO/HlLtJ	ENSMUSG00225003717	lncRNA gene	Chr2:179555305-179557396 (-)
PWK/PhJ	ENSLUMG00010038195	lncRNA gene	Chr2:169576634-169578731 (-)
SPRET/EiJ	ENSMSPG00010029481	lncRNA gene	Chr2:172329126-172331193 (-)
WSB/EiJ	ENSIUOG00005026847	lncRNA gene	Chr2:169420952-169423054 (-)

Homology

• Gene Tree
  Gm36462
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000120038 (Evidence)
• NCBI Gene
  102640393

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120038	Ensembl Gene Model | MGI Sequence Detail	2104	C57BL/6J
transcript	ENSMUST00000245703	Ensembl | MGI Sequence Detail	1569	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36462:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27962	Chr2:172903895-172903921 (-)	42 bp