Gm36459 Gene Detail

Summary

• Symbol
  Gm36459
• Name
  predicted gene, 36459

• Feature Type
  lncRNA gene
• IDs
  MGI:5595618
  NCBI Gene: 102640389
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:64701737-64729286 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  705 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595618	lncRNA gene	Chr9:64701580-64825964 (-)
129S1/SvImJ	ENSMUSG00200043624	lncRNA gene	Chr9:61804855-61821515 (-)
A/J	ENSMUSG00195026504	lncRNA gene	Chr9:61520563-61537162 (-)
AKR/J	ENSMUSG00220041711	lncRNA gene	Chr9:61664292-61680972 (-)
BALB/cJ	ENSMUSG00180018779	lncRNA gene	Chr9:61652522-61669193 (-)
C3H/HeJ	ENSMUSG00175013510	lncRNA gene	Chr9:61654309-61670899 (-)
C57BL/6NJ	ENSMUSG00215033519	lncRNA gene	Chr9:61639599-61656274 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034289	lncRNA gene	Chr9:61550011-61566774 (-)
CBA/J	ENSMUSG00210014641	lncRNA gene	Chr9:61735608-61752288 (-)
DBA/2J	ENSMUSG00185036319	lncRNA gene	Chr9:61759245-61775919 (-)
FVB/NJ	ENSMUSG00205038037	lncRNA gene	Chr9:62084258-62100978 (-)
JF1/MsJ	ENSUMUG00000041874	lncRNA gene	Chr9:61811511-61828418 (-)
LP/J	ENSMUSG00230027499	lncRNA gene	Chr9:62003937-62020594 (-)
NOD/ShiLtJ	ENSMUSG00190024363	lncRNA gene	Chr9:61848694-61865285 (-)
NZO/HlLtJ	ENSMUSG00225046531	lncRNA gene	Chr9:62072329-62089027 (-)
PWK/PhJ	ENSLUMG00010027025	lncRNA gene	Chr9:61782405-61799104 (-)
SPRET/EiJ	ENSMSPG00010022200	lncRNA gene	Chr9:62834893-62851996 (-)
WSB/EiJ	ENSIUOG00005027674	lncRNA gene	Chr9:61247072-61263808 (-)

Homology

• Gene Tree
  Gm36459
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm36459
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  3

• Ensembl
  ENSMUSG00000120030 (Evidence)
• NCBI Gene
  102640389

Representative Sequences			Length	Strain/Species
genomic	102640389	NCBI Gene Model | MGI Sequence Detail	27550	C57BL/6J
transcript	XR_870865	RefSeq | MGI Sequence Detail	10971	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm36459:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90161	Chr9:64718372-64718389 (-)	10,905 bp
Tssr90160	Chr9:64718317-64718331 (-)	10,962 bp
Tssr90159	Chr9:64718177-64718188 (-)	11,103 bp
Tssr90158	Chr9:64710720-64710756 (-)	18,548 bp
Tssr2910	Chr9:64703659-64703668 (-)	25,622 bp