Gm36457 Gene Detail

Summary

• Symbol
  Gm36457
• Name
  predicted gene, 36457

• Feature Type
  lncRNA gene
• IDs
  MGI:5595616
  NCBI Gene: 102640387
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:65359694-65360405 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595616	lncRNA gene	Chr16:65358857-65363596 (+)
129S1/SvImJ	ENSMUSG00200008325	lncRNA gene	Chr16:62271795-62273624 (+)
A/J	ENSMUSG00195001637	lncRNA gene	Chr16:61984062-61985891 (+)
AKR/J	ENSMUSG00220005555	lncRNA gene	Chr16:62254929-62256758 (+)
BALB/cJ	ENSMUSG00180001634	lncRNA gene	Chr16:62113290-62115119 (+)
C3H/HeJ	ENSMUSG00175004514	lncRNA gene	Chr16:62395765-62397594 (+)
C57BL/6NJ	ENSMUSG00215014381	lncRNA gene	Chr16:62198788-62200617 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012637	lncRNA gene	Chr16:62239635-62241470 (+)
CBA/J	ENSMUSG00210015182	lncRNA gene	Chr16:62336049-62337878 (+)
DBA/2J	ENSMUSG00185004636	lncRNA gene	Chr16:62290811-62292640 (+)
FVB/NJ	ENSMUSG00205012139	lncRNA gene	Chr16:62077780-62079609 (+)
JF1/MsJ	ENSUMUG00000016145	lncRNA gene	Chr16:62454164-62455994 (+)
LP/J	ENSMUSG00230007565	lncRNA gene	Chr16:64838446-64840275 (+)
NOD/ShiLtJ	ENSMUSG00190016591	lncRNA gene	Chr16:62332854-62334683 (+)
NZO/HlLtJ	ENSMUSG00225036136	lncRNA gene	Chr16:68082945-68084774 (+)
PWK/PhJ	ENSLUMG00010011899	lncRNA gene	Chr16:62093785-62095618 (+)
SPRET/EiJ	ENSMSPG00010002060	lncRNA gene	Chr16:62833909-62835722 (+)
WSB/EiJ	ENSIUOG00005002310	lncRNA gene	Chr16:62375309-62377138 (+)

Homology

• Gene Tree
  Gm36457
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm36457
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000120193 (Evidence)
• NCBI Gene
  102640387

Representative Sequences			Length	Strain/Species
genomic	102640387	NCBI Gene Model | MGI Sequence Detail	712	C57BL/6J
transcript	NR_166048	RefSeq | MGI Sequence Detail	608	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76

TSS for Gm36457:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138909	Chr16:65359670-65359733 (+)	8 bp