Gm36447 Gene Detail

Summary

• Symbol
  Gm36447
• Name
  predicted gene, 36447
• Synonyms
  Gm43299

• Feature Type
  lncRNA gene
• IDs
  MGI:5595606
  NCBI Gene: 102640374
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:150746324-150790079 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1468 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595606	lncRNA gene	Chr5:150738426-150791478 (+)
129S1/SvImJ	ENSMUSG00200011209	lncRNA gene	Chr5:144587023-144630772 (+)
A/J	ENSMUSG00195005013	lncRNA gene	Chr5:144204743-144248494 (+)
AKR/J	ENSMUSG00220015535	lncRNA gene	Chr5:143211810-143255559 (+)
BALB/cJ	ENSMUSG00180003317	lncRNA gene	Chr5:144607034-144650780 (+)
C3H/HeJ	ENSMUSG00175012076	lncRNA gene	Chr5:146447765-146491515 (+)
C57BL/6NJ	ENSMUSG00215000077	lncRNA gene	Chr5:144137891-144181636 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006271	lincRNA gene	Chr5:144381714-144431544 (+)
CAST/EiJ	ENSTCUG00005010054	lncRNA gene	Chr5:143717294-143761906 (+)
CBA/J	ENSMUSG00210001077	lncRNA gene	Chr5:145327895-145371645 (+)
DBA/2J	ENSMUSG00185043318	lncRNA gene	Chr5:148304477-148348221 (+)
FVB/NJ	ENSMUSG00205000166	lncRNA gene	Chr5:143986766-144030513 (+)
JF1/MsJ	ENSUMUG00000053294	lncRNA gene	Chr5:150804255-150848410 (+)
LP/J	ENSMUSG00230001426	lncRNA gene	Chr5:152303605-152347349 (+)
NOD/ShiLtJ	ENSMUSG00190006086	lncRNA gene	Chr5:143953940-143997684 (+)
NZO/HlLtJ	ENSMUSG00225009268	lncRNA gene	Chr5:160050192-160093943 (+)
PWK/PhJ	ENSLUMG00010000471	lncRNA gene	Chr5:143059773-143103588 (+)
SPRET/EiJ	ENSMSPG00010006651	lncRNA gene	Chr5:145854046-145895858 (+)
WSB/EiJ	ENSIUOG00005014830	lncRNA gene	Chr5:146731064-146774955 (+)

Homology

• Gene Tree
  Gm36447
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000106692 (Evidence)
• NCBI Gene
  102640374

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106692	Ensembl Gene Model | MGI Sequence Detail	43756	C57BL/6J
transcript	ENSMUST00000201101	Ensembl | MGI Sequence Detail	1991	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663436

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9