Gm36440 Gene Detail

Summary

• Symbol
  Gm36440
• Name
  predicted gene, 36440

• Feature Type
  lncRNA gene
• IDs
  MGI:5595599
  NCBI Gene: 102640357
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:108280179-108280667 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595599	lncRNA gene	Chr10:108280162-108315018 (-)
129S1/SvImJ	ENSMUSG00200011793	lncRNA gene	Chr10:104686098-104686771 (-)
A/J	ENSMUSG00195008935	lncRNA gene	Chr10:105100628-105101301 (-)
AKR/J	ENSMUSG00220025677	lncRNA gene	Chr10:104676364-104677039 (-)
BALB/cJ	ENSMUSG00180026588	lncRNA gene	Chr10:105113629-105114302 (-)
C3H/HeJ	ENSMUSG00175015904	lncRNA gene	Chr10:105043222-105043895 (-)
C57BL/6NJ	ENSMUSG00215011878	lncRNA gene	Chr10:104779491-104780166 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011590	lncRNA gene	Chr10:104186324-104187002 (-)
CBA/J	ENSMUSG00210011733	lncRNA gene	Chr10:104920995-104921668 (-)
DBA/2J	ENSMUSG00185024882	lncRNA gene	Chr10:105043018-105043691 (-)
FVB/NJ	ENSMUSG00205011552	lncRNA gene	Chr10:104545451-104546124 (-)
JF1/MsJ	ENSUMUG00000011095	lncRNA gene	Chr10:106416762-106417438 (-)
LP/J	ENSMUSG00230013469	lncRNA gene	Chr10:106996170-106996843 (-)
NOD/ShiLtJ	ENSMUSG00190021545	lncRNA gene	Chr10:105155589-105156264 (-)
NZO/HlLtJ	ENSMUSG00225041166	lncRNA gene	Chr10:111251850-111252523 (-)
PWK/PhJ	ENSLUMG00010014192	lncRNA gene	Chr10:104791820-104792496 (-)
SPRET/EiJ	ENSMSPG00010006063	lncRNA gene	Chr10:106601684-106602340 (-)
WSB/EiJ	ENSIUOG00005010504	lncRNA gene	Chr10:104838009-104838682 (-)

Homology

• Gene Tree
  Gm36440
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  17
• Chemically induced (other)
  1
• Gene trapped
  16
• Genomic Mutations
  1 involving Gm36440
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000120482 (Evidence)
• NCBI Gene
  102640357

Representative Sequences			Length	Strain/Species
genomic	102640357	NCBI Gene Model | MGI Sequence Detail	489	C57BL/6J
transcript	XR_380772	RefSeq | MGI Sequence Detail	380	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Gm36440:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99206	Chr10:108280880-108280888 (-)	-217 bp