Gm36423 Gene Detail

Summary

• Symbol
  Gm36423
• Name
  predicted gene, 36423

• Feature Type
  lncRNA gene
• IDs
  MGI:5595582
  NCBI Gene: 102640331
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr13:9731378-9740071 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  303 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595582	lncRNA gene	Chr13:9724567-9740071 (+)
129S1/SvImJ	ENSMUSG00200006528	lncRNA gene	Chr13:6909204-6914532 (+)
A/J	ENSMUSG00195013317	lncRNA gene	Chr13:6315686-6321004 (+)
AKR/J	ENSMUSG00220013203	lncRNA gene	Chr13:6560204-6565531 (+)
BALB/cJ	ENSMUSG00180009822	lncRNA gene	Chr13:6721210-6726528 (+)
C3H/HeJ	ENSMUSG00175008658	lncRNA gene	Chr13:6769879-6775197 (+)
C57BL/6NJ	ENSMUSG00215019293	lncRNA gene	Chr13:7022884-7028203 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025464	lncRNA gene	Chr13:6933726-6939053 (+)
CBA/J	ENSMUSG00210022947	lncRNA gene	Chr13:6297392-6302710 (+)
DBA/2J	ENSMUSG00185024783	lncRNA gene	Chr13:6986197-6991515 (+)
FVB/NJ	ENSMUSG00205025179	lncRNA gene	Chr13:6737664-6742982 (+)
JF1/MsJ	ENSUMUG00000012366	lncRNA gene	Chr13:7002945-7008273 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014001	lncRNA gene	Chr13:6417243-6422570 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010017437	lncRNA gene	Chr13:6377833-6383156 (+)
SPRET/EiJ	ENSMSPG00010024936	lncRNA gene	Chr13:6335473-6340798 (+)
WSB/EiJ	ENSIUOG00005021603	lncRNA gene	Chr13:6296454-6301780 (+)

Homology

• Gene Tree
  Gm36423
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  6

• Ensembl
  ENSMUSG00000114138 (Evidence)
• NCBI Gene
  102640331

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114138	Ensembl Gene Model | MGI Sequence Detail	8694	C57BL/6J
transcript	ENSMUST00000327530	Ensembl | MGI Sequence Detail	1841	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36423:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118329	Chr13:9734275-9734286 (+)	2,903 bp
Tssr118330	Chr13:9734291-9734314 (+)	2,925 bp
Tssr118331	Chr13:9734320-9734344 (+)	2,954 bp
Tssr3990	Chr13:9734351-9734358 (+)	2,977 bp
Tssr118332	Chr13:9734593-9734598 (+)	3,218 bp
Tssr118333	Chr13:9735151-9735156 (+)	3,776 bp