Gm36411 Gene Detail

Summary

• Symbol
  Gm36411
• Name
  predicted gene, 36411

• Feature Type
  lncRNA gene
• IDs
  MGI:5595570
  NCBI Gene: 102640312
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:49603735-49608898 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595570	lncRNA gene	Chr11:49603735-49618477 (+)
129S1/SvImJ	ENSMUSG00200040652	lncRNA gene	Chr11:46582150-46583913 (+)
A/J	ENSMUSG00195036615	lncRNA gene	Chr11:46532915-46534678 (+)
AKR/J	ENSMUSG00220038917	lncRNA gene	Chr11:46719673-46721436 (+)
BALB/cJ	ENSMUSG00180038134	lncRNA gene	Chr11:46594401-46596164 (+)
C3H/HeJ	ENSMUSG00175039491	lncRNA gene	Chr11:46564560-46566323 (+)
C57BL/6NJ	ENSMUSG00215038509	lncRNA gene	Chr11:46491380-46493143 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043785	lncRNA gene	Chr11:46112964-46114711 (+)
CBA/J	ENSMUSG00210030365	lncRNA gene	Chr11:46420521-46422284 (+)
DBA/2J	ENSMUSG00185028799	lncRNA gene	Chr11:46674715-46676478 (+)
FVB/NJ	ENSMUSG00205038606	lncRNA gene	Chr11:46462315-46464078 (+)
JF1/MsJ	ENSUMUG00000041372	lncRNA gene	Chr11:46929015-46930785 (+)
LP/J	ENSMUSG00230034161	lncRNA gene	Chr11:47813879-47815642 (+)
NOD/ShiLtJ	ENSMUSG00190044853	lncRNA gene	Chr11:46679145-46680908 (+)
NZO/HlLtJ	ENSMUSG00225036128	lncRNA gene	Chr11:49798182-49799945 (+)
PWK/PhJ	ENSLUMG00010035213	lncRNA gene	Chr11:46441898-46443662 (+)
SPRET/EiJ	ENSMSPG00010021141	lncRNA gene	Chr11:47108243-47110081 (+)
WSB/EiJ	ENSIUOG00005040988	lncRNA gene	Chr11:46478106-46479870 (+)

Homology

• Gene Tree
  Gm36411
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  6
• Genomic Mutations
  1 involving Gm36411
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  6

• Ensembl
  ENSMUSG00000120410 (Evidence)
• NCBI Gene
  102640312

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120410	Ensembl Gene Model | MGI Sequence Detail	5164	C57BL/6J
transcript	ENSMUST00000251232	Ensembl | MGI Sequence Detail	2420	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm36411:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101192	Chr11:49603748-49603789 (+)	34 bp