Gm36406 Gene Detail

Summary

• Symbol
  Gm36406
• Name
  predicted gene, 36406
• Synonyms
  Gm43996

• Feature Type
  lncRNA gene
• IDs
  MGI:5595565
  NCBI Gene: 102640305
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:16454380-16469902 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  530 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595565	lncRNA gene	Chr6:16433833-16505297 (-)
129S1/SvImJ	ENSMUSG00200020110	lncRNA gene	Chr6:13504492-13517004 (-)
A/J	ENSMUSG00195013135	lncRNA gene	Chr6:13455280-13467833 (-)
AKR/J	ENSMUSG00220001132	lncRNA gene	Chr6:13031772-13044329 (-)
BALB/cJ	ENSMUSG00180001362	lncRNA gene	Chr6:13599040-13611587 (-)
C3H/HeJ	ENSMUSG00175016628	lncRNA gene	Chr6:13380798-13393345 (-)
C57BL/6NJ	ENSMUSG00215012891	lncRNA gene	Chr6:13512708-13525279 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013750	unclassified non-coding RNA gene	Chr6:12104258-12117920 (-)
CAST/EiJ	ENSTCUG00005022086	lncRNA gene	Chr6:13224453-13239250 (-)
CBA/J	ENSMUSG00210007038	lncRNA gene	Chr6:13412990-13425537 (-)
DBA/2J	ENSMUSG00185026546	lncRNA gene	Chr6:13539461-13552012 (-)
FVB/NJ	ENSMUSG00205008492	lncRNA gene	Chr6:13469476-13482024 (-)
JF1/MsJ	ENSUMUG00000001792	lncRNA gene	Chr6:13317582-13330093 (-)
LP/J	ENSMUSG00230003177	lncRNA gene	Chr6:14535131-14547643 (-)
NOD/ShiLtJ	ENSMUSG00190010341	lncRNA gene	Chr6:13287838-13300402 (-)
NZO/HlLtJ	ENSMUSG00225006122	lncRNA gene	Chr6:16425424-16437969 (-)
PWK/PhJ	ENSLUMG00010020102	lncRNA gene	Chr6:13042835-13055285 (-)
SPRET/EiJ	ENSMSPG00010015160	lncRNA gene	Chr6:13247474-13275473 (-)
WSB/EiJ	ENSIUOG00005003862	lncRNA gene	Chr6:13504361-13516887 (-)

Homology

• Gene Tree
  Gm36406
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  2

• Ensembl
  ENSMUSG00000108295 (Evidence)
• NCBI Gene
  102640305

Representative Sequences			Length	Strain/Species
genomic	102640305	NCBI Gene Model | MGI Sequence Detail	15523	C57BL/6J
transcript	NR_168007	RefSeq | MGI Sequence Detail	1137	ZRU/MplStud

Other
Accession IDs

MGI:5690388

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm36406:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59885	Chr6:16469891-16469907 (-)	3 bp