Gm36393 Gene Detail

Summary

• Symbol
  Gm36393
• Name
  predicted gene, 36393

• Feature Type
  lncRNA gene
• IDs
  MGI:5595552
  NCBI Gene: 102640284
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr2:69209195-69236126 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  936 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595552	lncRNA gene	Chr2:69208880-69236232 (-)
129S1/SvImJ	ENSMUSG00200037120	lncRNA gene	Chr2:66269776-66295537 (-)
A/J	ENSMUSG00195022998	lncRNA gene	Chr2:66413350-66438908 (-)
AKR/J	ENSMUSG00220040405	lncRNA gene	Chr2:66378210-66403770 (-)
BALB/cJ	ENSMUSG00180042873	lncRNA gene	Chr2:66366436-66392169 (-)
C3H/HeJ	ENSMUSG00175038967	lncRNA gene	Chr2:66485800-66511522 (-)
C57BL/6NJ	ENSMUSG00215034931	lncRNA gene	Chr2:66306152-66331916 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009442	lncRNA gene	Chr2:65784555-65810450 (-)
CBA/J	ENSMUSG00210039420	lncRNA gene	Chr2:66526070-66551802 (-)
DBA/2J	ENSMUSG00185042388	lncRNA gene	Chr2:66361583-66387322 (-)
FVB/NJ	ENSMUSG00205039610	lncRNA gene	Chr2:65828291-65853842 (-)
JF1/MsJ	ENSUMUG00000007099	lncRNA gene	Chr2:66025241-66051155 (-)
LP/J	ENSMUSG00230023569	lncRNA gene	Chr2:68167157-68192893 (-)
NOD/ShiLtJ	ENSMUSG00190040148	lncRNA gene	Chr2:66446703-66472369 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010033845	lncRNA gene	Chr2:66245744-66270594 (-)
SPRET/EiJ	ENSMSPG00010038419	lncRNA gene	Chr2:67620604-67646363 (-)
WSB/EiJ	ENSIUOG00005019879	lncRNA gene	Chr2:66495872-66521696 (-)

Homology

• Gene Tree
  Gm36393
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm36393
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  2

• Ensembl
  ENSMUSG00000120788 (Evidence)
• NCBI Gene
  102640284

Representative Sequences			Length	Strain/Species
genomic	102640284	NCBI Gene Model | MGI Sequence Detail	26932	C57BL/6J
transcript	KY467869	GenBank | ENA | DDBJ | MGI Sequence Detail	1016	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36393:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24432	Chr2:69236195-69236206 (-)	-75 bp
Tssr24431	Chr2:69236163-69236190 (-)	-51 bp
Tssr24430	Chr2:69213378-69213390 (-)	22,742 bp
Tssr24429	Chr2:69213329-69213348 (-)	22,787 bp
Tssr513	Chr2:69212253-69212266 (-)	23,866 bp
Tssr24428	Chr2:69210650-69210661 (-)	25,470 bp