Gm36371 Gene Detail

Summary

• Symbol
  Gm36371
• Name
  predicted gene, 36371
• Synonyms
  Gm44890

• Feature Type
  lncRNA gene
• IDs
  MGI:5595530
  NCBI Gene: 102640259
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:6159515-6160617 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595530	lncRNA gene	Chr7:6159515-6166583 (+)
129S1/SvImJ	ENSMUSG00200041684	lncRNA gene	Chr7:3039935-3041038 (+)
A/J	ENSMUSG00195052145	lncRNA gene	Chr7:2891071-2892173 (+)
AKR/J	ENSMUSG00220027057	lncRNA gene	Chr7:536169-537272 (+)
BALB/cJ	ENSMUSG00180049993	lncRNA gene	Chr7:2846296-2847398 (+)
C3H/HeJ	ENSMUSG00175050813	lncRNA gene	Chr7:2774369-2775471 (+)
C57BL/6NJ	ENSMUSG00215044155	lncRNA gene	Chr7:2894763-2895866 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028851	lncRNA gene	Chr7:2969785-2970892 (+)
CBA/J	ENSMUSG00210049321	lncRNA gene	Chr7:2802525-2803627 (+)
DBA/2J	ENSMUSG00185044802	lncRNA gene	Chr7:3034825-3035927 (+)
FVB/NJ	ENSMUSG00205048745	lncRNA gene	Chr7:2652043-2653143 (+)
JF1/MsJ	ENSUMUG00000055369	lncRNA gene	Chr7:3122027-3123134 (+)
LP/J	ENSMUSG00230040848	lncRNA gene	Chr7:6045567-6046669 (+)
NOD/ShiLtJ	ENSMUSG00190051114	lncRNA gene	Chr7:2924765-2925867 (+)
NZO/HlLtJ	ENSMUSG00225021047	lncRNA gene	Chr7:3892192-3893292 (+)
PWK/PhJ	ENSLUMG00010050426	lncRNA gene	Chr7:6596090-6597197 (+)
SPRET/EiJ	ENSMSPG00010050046	lncRNA gene	Chr7:2605766-2606849 (+)
WSB/EiJ	ENSIUOG00005053180	lncRNA gene	Chr7:2731651-2732753 (+)

Homology

• Gene Tree
  Gm36371
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109108 (Evidence)
• NCBI Gene
  102640259

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109108	Ensembl Gene Model | MGI Sequence Detail	1103	C57BL/6J
transcript	ENSMUST00000209043	Ensembl | MGI Sequence Detail	1103	Not Applicable

Other
Accession IDs

MGI:5753466

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm36371:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64433	Chr7:6158293-6158307 (+)	-1,215 bp
Tssr64434	Chr7:6158799-6158810 (+)	-710 bp