Gm36347 Gene Detail

Summary

• Symbol
  Gm36347
• Name
  predicted gene, 36347

• Feature Type
  lncRNA gene
• IDs
  MGI:5595506
  NCBI Gene: 102640230
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:129536296-129543926 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  324 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595506	lncRNA gene	Chr1:129522897-129543983 (-)
129S1/SvImJ	ENSMUSG00200009687	lncRNA gene	Chr1:127106921-127114403 (-)
A/J	ENSMUSG00195045464	lncRNA gene	Chr1:126177524-126185010 (-)
AKR/J	ENSMUSG00220050803	lncRNA gene	Chr1:126043906-126051390 (-)
BALB/cJ	ENSMUSG00180038848	lncRNA gene	Chr1:126761540-126769024 (-)
C3H/HeJ	ENSMUSG00175046825	lncRNA gene	Chr1:126442979-126450463 (-)
C57BL/6NJ	ENSMUSG00215046408	lncRNA gene	Chr1:126458609-126466095 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038260	lncRNA gene	Chr1:125378364-125385896 (-)
CBA/J	ENSMUSG00210029241	lncRNA gene	Chr1:126332740-126340247 (-)
DBA/2J	ENSMUSG00185002052	lncRNA gene	Chr1:130705742-130713226 (-)
FVB/NJ	ENSMUSG00205045652	lncRNA gene	Chr1:125666727-125674211 (-)
JF1/MsJ	ENSUMUG00000002691	lncRNA gene	Chr1:129820434-129827920 (-)
LP/J	ENSMUSG00230001204	lncRNA gene	Chr1:130285283-130292767 (-)
NOD/ShiLtJ	ENSMUSG00190046230	lncRNA gene	Chr1:126336043-126343552 (-)
NZO/HlLtJ	ENSMUSG00225021016	lncRNA gene	Chr1:134021963-134029447 (-)
PWK/PhJ	ENSLUMG00010027779	lncRNA gene	Chr1:125446604-125454081 (-)
SPRET/EiJ	ENSMSPG00010045885	lncRNA gene	Chr1:128261559-128269010 (-)
WSB/EiJ	ENSIUOG00005048918	lncRNA gene	Chr1:126074917-126082423 (-)

Homology

• Gene Tree
  Gm36347
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm36347
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000121239 (Evidence)
• NCBI Gene
  102640230

Representative Sequences			Length	Strain/Species
genomic	102640230	NCBI Gene Model | MGI Sequence Detail	7631	C57BL/6J
transcript	XR_387357	RefSeq | MGI Sequence Detail	688	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm36347:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13490	Chr1:129543929-129543983 (-)	-30 bp