Gm36298 Pseudogene Detail

Summary

• Symbol
  Gm36298
• Name
  predicted gene, 36298

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5595457
  NCBI Gene: 102640165
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:62787367-62801028 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  543 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595457	pseudogene	Chr13:62786554-62801069 (-)
129S1/SvImJ	ENSMUSG00200014888	protein coding gene	Chr13:58876506-58927238 (-)
129S1/SvImJ	ENSMUSG00200017516	pseudogene	Chr13:58913864-58917228 (-)
A/J	ENSMUSG00195046805	pseudogene	Chr13:59070783-59074146 (-)
AKR/J	ENSMUSG00220045501	pseudogene	Chr13:58137639-58141005 (-)
BALB/cJ	ENSMUSG00180017783	pseudogene	Chr13:59401304-59404710 (-)
C3H/HeJ	ENSMUSG00175035459	protein coding gene	Chr13:59194048-59208954 (-)
C3H/HeJ	ENSMUSG00175046348	pseudogene	Chr13:59195569-59198935 (-)
C57BL/6NJ	ENSMUSG00215037834	protein coding gene	Chr13:59196471-59211375 (-)
C57BL/6NJ	ENSMUSG00215041116	pseudogene	Chr13:59197990-59201356 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041044	pseudogene	Chr13:59609188-59612585 (-)
CBA/J	ENSMUSG00210031394	protein coding gene	Chr13:59393531-59408435 (-)
CBA/J	ENSMUSG00210043108	pseudogene	Chr13:59395050-59398416 (-)
DBA/2J	ENSMUSG00185015671	protein coding gene	Chr13:60242142-60257048 (-)
DBA/2J	ENSMUSG00185018668	pseudogene	Chr13:60243663-60247029 (-)
FVB/NJ	ENSMUSG00205044848	pseudogene	Chr13:58390267-58393674 (-)
JF1/MsJ	ENSUMUG00000040129	pseudogene	Chr13:59885925-59889323 (-)
LP/J	ENSMUSG00230036280	pseudogene	Chr13:69592557-69595926 (-)
NOD/ShiLtJ	ENSMUSG00190040365	pseudogene	Chr13:59151035-59154398 (-)
NZO/HlLtJ	ENSMUSG00225047661	pseudogene	Chr13:63294941-63298307 (-)
NZO/HlLtJ	ENSMUSG00225046388	protein coding gene	Chr13:63293420-63308326 (-)
PWK/PhJ	ENSLUMG00010024505	pseudogene	Chr13:58726690-58730088 (-)
SPRET/EiJ	ENSMSPG00010044270	pseudogene	Chr13:58828858-58832262 (-)
WSB/EiJ	ENSIUOG00005026214	pseudogene	Chr13:57881476-57884840 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm36298
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000114172 (Evidence), ENSMUSG00000128858 (Evidence)
• NCBI Gene
  102640165

Representative Sequences			Length	Strain/Species
genomic	102640165	NCBI Gene Model | MGI Sequence Detail	13662	C57BL/6J
transcript	NM_001378675	RefSeq | MGI Sequence Detail	2179	ZRU/MplStud
polypeptide	NP_001365604	RefSeq | MGI Sequence Detail	353	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm36298:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122956	Chr13:62801006-62801046 (-)	2 bp