Gm36283 Gene Detail

Summary

• Symbol
  Gm36283
• Name
  predicted gene, 36283

• Feature Type
  lncRNA gene
• IDs
  MGI:5595442
  NCBI Gene: 102640148
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:108253112-108287477 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595442	lncRNA gene	Chr10:108253112-108289158 (+)
129S1/SvImJ	ENSMUSG00200011745	lncRNA gene	Chr10:104659081-104695065 (+)
A/J	ENSMUSG00195008894	lncRNA gene	Chr10:105073604-105109594 (+)
AKR/J	ENSMUSG00220025639	lncRNA gene	Chr10:104649318-104685344 (+)
BALB/cJ	ENSMUSG00180026470	lncRNA gene	Chr10:105086602-105122602 (+)
C3H/HeJ	ENSMUSG00175015852	lncRNA gene	Chr10:105016198-105052187 (+)
C57BL/6NJ	ENSMUSG00215011834	lncRNA gene	Chr10:104752414-104788467 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011586	lncRNA gene	Chr10:104159283-104195302 (+)
CBA/J	ENSMUSG00210011714	lncRNA gene	Chr10:104893974-104929962 (+)
DBA/2J	ENSMUSG00185024806	lncRNA gene	Chr10:105015993-105051982 (+)
FVB/NJ	ENSMUSG00205011499	lncRNA gene	Chr10:104518426-104554412 (+)
JF1/MsJ	ENSUMUG00000010984	lncRNA gene	Chr10:106389878-106425784 (+)
LP/J	ENSMUSG00230013074	lncRNA gene	Chr10:106969151-107005135 (+)
NOD/ShiLtJ	ENSMUSG00190021520	lncRNA gene	Chr10:105128547-105164571 (+)
NZO/HlLtJ	ENSMUSG00225041087	lncRNA gene	Chr10:111224827-111260815 (+)
PWK/PhJ	ENSLUMG00010014160	lncRNA gene	Chr10:104765061-104800847 (+)
SPRET/EiJ	ENSMSPG00010006051	lncRNA gene	Chr10:106570424-106610687 (+)
WSB/EiJ	ENSIUOG00005010493	lncRNA gene	Chr10:104810973-104846972 (+)

Homology

• Gene Tree
  Gm36283
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving Gm36283
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000112532 (Evidence)
• NCBI Gene
  102640148

Representative Sequences			Length	Strain/Species
genomic	102640148	NCBI Gene Model | MGI Sequence Detail	34366	C57BL/6J
transcript	NR_155870	RefSeq | MGI Sequence Detail	392	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm36283:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95678	Chr10:108270037-108270055 (+)	16,934 bp
Tssr95679	Chr10:108272553-108272556 (+)	19,443 bp