Gm36220 Gene Detail

Summary

• Symbol
  Gm36220
• Name
  predicted gene, 36220

• Feature Type
  lncRNA gene
• IDs
  MGI:5595379
  NCBI Gene: 102640063
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:106391741-106392037 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595379	lncRNA gene	Chr11:106391429-106393417 (+)
129S1/SvImJ	ENSMUSG00200033407	lncRNA gene	Chr11:103698991-103700533 (+)
A/J	ENSMUSG00195023176	lncRNA gene	Chr11:103397934-103399476 (+)
AKR/J	ENSMUSG00220037328	lncRNA gene	Chr11:103611017-103612559 (+)
BALB/cJ	ENSMUSG00180020944	lncRNA gene	Chr11:103720290-103721832 (+)
C3H/HeJ	ENSMUSG00175013170	lncRNA gene	Chr11:103669347-103670889 (+)
C57BL/6NJ	ENSMUSG00215018529	lncRNA gene	Chr11:103237342-103238883 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041302	lncRNA gene	Chr11:103137789-103139356 (+)
CBA/J	ENSMUSG00210013967	lncRNA gene	Chr11:103378539-103380071 (+)
DBA/2J	ENSMUSG00185020732	lncRNA gene	Chr11:103719175-103720717 (+)
FVB/NJ	ENSMUSG00205037856	lncRNA gene	Chr11:103524658-103526200 (+)
JF1/MsJ	ENSUMUG00000032696	lncRNA gene	Chr11:103979585-103981155 (+)
LP/J	ENSMUSG00230035270	lncRNA gene	Chr11:104771365-104772907 (+)
NOD/ShiLtJ	ENSMUSG00190022951	lncRNA gene	Chr11:103717706-103719248 (+)
NZO/HlLtJ	ENSMUSG00225052665	lncRNA gene	Chr11:106806864-106808397 (+)
PWK/PhJ	ENSLUMG00010016320	lncRNA gene	Chr11:103501102-103502672 (+)
SPRET/EiJ	ENSMSPG00010037237	lncRNA gene	Chr11:104014698-104016264 (+)
WSB/EiJ	ENSIUOG00005018092	lncRNA gene	Chr11:103498918-103500463 (+)

Homology

• Gene Tree
  Gm36220
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  9
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000120012 (Evidence)
• NCBI Gene
  102640063

Representative Sequences			Length	Strain/Species
genomic	102640063	NCBI Gene Model | MGI Sequence Detail	297	C57BL/6J
transcript	NR_168513	RefSeq | MGI Sequence Detail	105	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22

TSS for Gm36220:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105537	Chr11:106391734-106391751 (+)	2 bp