Gm36180 Gene Detail

Summary

• Symbol
  Gm36180
• Name
  predicted gene, 36180

• Feature Type
  lncRNA gene
• IDs
  MGI:5595339
  NCBI Gene: 102639999
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:129637885-129640851 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595339	lncRNA gene	Chr3:129637713-129672971 (-)
129S1/SvImJ	ENSMUSG00200004053	lncRNA gene	Chr3:126405598-126408643 (-)
A/J	ENSMUSG00195008607	lncRNA gene	Chr3:126525195-126528188 (-)
AKR/J	ENSMUSG00220022937	lncRNA gene	Chr3:124961815-124964869 (-)
BALB/cJ	ENSMUSG00180003896	lncRNA gene	Chr3:126453872-126456865 (-)
C3H/HeJ	ENSMUSG00175014779	lncRNA gene	Chr3:126020270-126023261 (-)
C57BL/6NJ	ENSMUSG00215027785	lncRNA gene	Chr3:126786993-126789986 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004036	lncRNA gene	Chr3:127101393-127104455 (-)
CBA/J	ENSMUSG00210004336	lncRNA gene	Chr3:126628866-126631859 (-)
DBA/2J	ENSMUSG00185026937	lncRNA gene	Chr3:127241945-127244936 (-)
FVB/NJ	ENSMUSG00205029308	lncRNA gene	Chr3:125575060-125578102 (-)
JF1/MsJ	ENSUMUG00000033362	lncRNA gene	Chr3:125975338-125978443 (-)
LP/J	ENSMUSG00230004712	lncRNA gene	Chr3:129225913-129228958 (-)
NOD/ShiLtJ	ENSMUSG00190002073	lncRNA gene	Chr3:127639616-127642655 (-)
NZO/HlLtJ	ENSMUSG00225004224	lncRNA gene	Chr3:131676663-131679657 (-)
PWK/PhJ	ENSLUMG00010015917	lncRNA gene	Chr3:125998750-126001841 (-)
SPRET/EiJ	ENSMSPG00010013986	lncRNA gene	Chr3:126974132-126977196 (-)
WSB/EiJ	ENSIUOG00005017687	lncRNA gene	Chr3:126753528-126756524 (-)

Homology

• Gene Tree
  Gm36180
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm36180
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000120149 (Evidence)
• NCBI Gene
  102639999

Representative Sequences			Length	Strain/Species
genomic	102639999	NCBI Gene Model | MGI Sequence Detail	2967	C57BL/6J
transcript	XR_376068	RefSeq | MGI Sequence Detail	1141	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm36180:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35639	Chr3:129640663-129640712 (-)	163 bp