Gm36146 Gene Detail

Summary

• Symbol
  Gm36146
• Name
  predicted gene, 36146

• Feature Type
  lncRNA gene
• IDs
  MGI:5595305
  NCBI Gene: 102639955
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:49960081-49981993 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  524 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595305	lncRNA gene	Chr14:49955911-49981993 (+)
129S1/SvImJ	ENSMUSG00200016988	lncRNA gene	Chr14:38827518-38849247 (+)
A/J	ENSMUSG00195025435	lncRNA gene	Chr14:39037709-39059442 (+)
AKR/J	ENSMUSG00220043401	lncRNA gene	Chr14:38411368-38433105 (+)
BALB/cJ	ENSMUSG00180046003	lncRNA gene	Chr14:38638096-38659843 (+)
C3H/HeJ	ENSMUSG00175028693	lncRNA gene	Chr14:40327075-40348806 (+)
C57BL/6NJ	ENSMUSG00215039771	lncRNA gene	Chr14:38984342-39005975 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011105	lncRNA gene	Chr14:40800644-40822426 (+)
CBA/J	ENSMUSG00210045443	lncRNA gene	Chr14:38963638-38985371 (+)
DBA/2J	ENSMUSG00185055681	lncRNA gene	Chr14:43743764-43765481 (+)
FVB/NJ	ENSMUSG00205046709	lncRNA gene	Chr14:38170319-38192010 (+)
JF1/MsJ	ENSUMUG00000050251	lncRNA gene	Chr14:55760658-55782291 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190045172	lncRNA gene	Chr14:38647448-38669136 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010041874	lncRNA gene	Chr14:38232903-38254645 (+)
SPRET/EiJ	ENSMSPG00010048335	lncRNA gene	Chr14:41561406-41583470 (+)
WSB/EiJ	ENSIUOG00005044010	lncRNA gene	Chr14:38524463-38546222 (+)

Homology

• Gene Tree
  Gm36146
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm36146
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000115787 (Evidence)
• NCBI Gene
  102639955

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115787	Ensembl Gene Model | MGI Sequence Detail	21913	C57BL/6J
transcript	ENSMUST00000338692	Ensembl | MGI Sequence Detail	987	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm36146:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125362	Chr14:49962077-49962099 (+)	2,007 bp