Gm36129 Gene Detail

Summary

• Symbol
  Gm36129
• Name
  predicted gene, 36129

• Feature Type
  lncRNA gene
• IDs
  MGI:5595288
  NCBI Gene: 102639931
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:24731843-24750990 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  678 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595288	lncRNA gene	Chr12:24729781-24750990 (+)
129S1/SvImJ	ENSMUSG00200023286	lncRNA gene	Chr12:16485496-16500272 (+)
A/J	ENSMUSG00195021814	lncRNA gene	Chr12:19211238-19225864 (+)
AKR/J	ENSMUSG00220028932	lncRNA gene	Chr12:17160970-17175746 (+)
BALB/cJ	ENSMUSG00180009462	lncRNA gene	Chr12:18153892-18168515 (+)
C3H/HeJ	ENSMUSG00175021774	lncRNA gene	Chr12:21210952-21225484 (+)
C57BL/6NJ	ENSMUSG00215006578	lncRNA gene	Chr12:17627049-17646151 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005662	lncRNA gene	Chr12:18016085-18030870 (+)
CBA/J	ENSMUSG00210008000	lncRNA gene	Chr12:17697178-17711700 (+)
DBA/2J	ENSMUSG00185003840	lncRNA gene	Chr12:19727489-19742247 (+)
FVB/NJ	ENSMUSG00205001805	lncRNA gene	Chr12:17796405-17811178 (+)
JF1/MsJ	ENSUMUG00000006562	lncRNA gene	Chr12:23939828-23954482 (+)
LP/J	ENSMUSG00230007006	lncRNA gene	Chr12:26694149-26708927 (+)
NOD/ShiLtJ	ENSMUSG00190013912	lncRNA gene	Chr12:16660892-16675512 (+)
NZO/HlLtJ	ENSMUSG00225034740	lncRNA gene	Chr12:28877254-28892032 (+)
PWK/PhJ	ENSLUMG00010005117	lncRNA gene	Chr12:18213288-18227766 (+)
SPRET/EiJ	ENSMSPG00010003058	lncRNA gene	Chr12:18472538-18487182 (+)
WSB/EiJ	ENSIUOG00005001757	lncRNA gene	Chr12:17356235-17370747 (+)

Homology

• Gene Tree
  Gm36129
  

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  8

• Ensembl
  ENSMUSG00000120079 (Evidence)
• NCBI Gene
  102639931

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120079	Ensembl Gene Model | MGI Sequence Detail	19148	C57BL/6J
transcript	ENSMUST00000366379	Ensembl | MGI Sequence Detail	1995	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36129:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112959	Chr12:24731924-24731935 (+)	87 bp
Tssr112960	Chr12:24732695-24732699 (+)	854 bp