Gm36074 Gene Detail

Summary

• Symbol
  Gm36074
• Name
  predicted gene, 36074

• Feature Type
  lncRNA gene
• IDs
  MGI:5595233
  NCBI Gene: 102639860
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:7496704-7526797 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1173 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595233	lncRNA gene	Chr13:7496542-7531341 (+)
129S1/SvImJ	ENSMUSG00200006749	lncRNA gene	Chr13:4663828-4682662 (+)
A/J	ENSMUSG00195012954	lncRNA gene	Chr13:4081590-4100425 (+)
AKR/J	ENSMUSG00220013566	lncRNA gene	Chr13:4337712-4353504 (+)
BALB/cJ	ENSMUSG00180010054	lncRNA gene	Chr13:4487376-4506210 (+)
C3H/HeJ	ENSMUSG00175008626	lncRNA gene	Chr13:4528998-4547831 (+)
C57BL/6NJ	ENSMUSG00215020226	lncRNA gene	Chr13:4756754-4775588 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025869	lncRNA gene	Chr13:4697491-4716394 (+)
CBA/J	ENSMUSG00210023014	lncRNA gene	Chr13:4058109-4076943 (+)
DBA/2J	ENSMUSG00185025073	lncRNA gene	Chr13:4746717-4765552 (+)
FVB/NJ	ENSMUSG00205025416	lncRNA gene	Chr13:4488027-4506863 (+)
JF1/MsJ	ENSUMUG00000011858	lncRNA gene	Chr13:4776622-4792415 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014367	lncRNA gene	Chr13:4191326-4207118 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010017528	lncRNA gene	Chr13:4129344-4145119 (+)
SPRET/EiJ	ENSMSPG00010027296	lncRNA gene	Chr13:4085236-4106784 (+)
WSB/EiJ	ENSIUOG00005022821	lncRNA gene	Chr13:4047647-4066520 (+)

Homology

• Gene Tree
  Gm36074
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000113225 (Evidence)
• NCBI Gene
  102639860

Representative Sequences			Length	Strain/Species
genomic	102639860	NCBI Gene Model | MGI Sequence Detail	30094	C57BL/6J
transcript	XR_382036	RefSeq | MGI Sequence Detail	448	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36074:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118291	Chr13:7496555-7496575 (+)	-139 bp