Gm36012 Gene Detail

Summary

• Symbol
  Gm36012
• Name
  predicted gene, 36012

• Feature Type
  lncRNA gene
• IDs
  MGI:5595171
  NCBI Gene: 102639781
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:101400490-101408398 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595171	lncRNA gene	Chr4:101400490-101408398 (-)
129S1/SvImJ	ENSMUSG00200030581	lncRNA gene	Chr4:96388875-96396790 (-)
A/J	ENSMUSG00195008556	lncRNA gene	Chr4:96942487-96950425 (-)
AKR/J	ENSMUSG00220006867	lncRNA gene	Chr4:96382936-96390918 (-)
BALB/cJ	ENSMUSG00180035030	lncRNA gene	Chr4:95867819-95875759 (-)
C3H/HeJ	ENSMUSG00175015344	lncRNA gene	Chr4:96861541-96869479 (-)
C57BL/6NJ	ENSMUSG00215022890	lncRNA gene	Chr4:96776635-96784539 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007713	lncRNA gene	Chr4:96045323-96053217 (-)
CBA/J	ENSMUSG00210029654	lncRNA gene	Chr4:96403865-96411799 (-)
DBA/2J	ENSMUSG00185022782	lncRNA gene	Chr4:97173192-97181104 (-)
FVB/NJ	ENSMUSG00205015813	lncRNA gene	Chr4:95367667-95375582 (-)
JF1/MsJ	ENSUMUG00000042772	lncRNA gene	Chr4:97260119-97268083 (-)
LP/J	ENSMUSG00230023354	lncRNA gene	Chr4:100478338-100486246 (-)
NOD/ShiLtJ	ENSMUSG00190031946	lncRNA gene	Chr4:95835189-95843099 (-)
NZO/HlLtJ	ENSMUSG00225033025	lncRNA gene	Chr4:105610867-105618798 (-)
PWK/PhJ	ENSLUMG00010018460	lncRNA gene	Chr4:94952406-94960398 (-)
SPRET/EiJ	ENSMSPG00010008350	lncRNA gene	Chr4:97179773-97187592 (-)
WSB/EiJ	ENSIUOG00005003134	lncRNA gene	Chr4:96139233-96147077 (-)

Homology

• Gene Tree
  Gm36012
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm36012
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000120834 (Evidence)
• NCBI Gene
  102639781

Representative Sequences			Length	Strain/Species
genomic	102639781	NCBI Gene Model | MGI Sequence Detail	7909	C57BL/6J
transcript	NR_168609	RefSeq | MGI Sequence Detail	861	ZRU/MplStud

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm36012:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42562	Chr4:101408394-101408399 (-)	1 bp