Gm36002 Gene Detail

Summary

• Symbol
  Gm36002
• Name
  predicted gene, 36002

• Feature Type
  lncRNA gene
• IDs
  MGI:5595161
  NCBI Gene: 102639771
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:68408942-68412683 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595161	lncRNA gene	Chr2:68405003-68412721 (-)
129S1/SvImJ	ENSMUSG00200037219	lncRNA gene	Chr2:65469881-65473579 (-)
A/J	ENSMUSG00195022653	lncRNA gene	Chr2:65606121-65609783 (-)
AKR/J	ENSMUSG00220040485	lncRNA gene	Chr2:65573224-65576882 (-)
BALB/cJ	ENSMUSG00180042266	lncRNA gene	Chr2:65564988-65568646 (-)
C3H/HeJ	ENSMUSG00175039044	lncRNA gene	Chr2:65686025-65689697 (-)
C57BL/6NJ	ENSMUSG00215030708	lncRNA gene	Chr2:65504271-65507929 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009649	lncRNA gene	Chr2:64961607-64966386 (-)
CBA/J	ENSMUSG00210037998	lncRNA gene	Chr2:65726300-65729972 (-)
DBA/2J	ENSMUSG00185042060	lncRNA gene	Chr2:65564111-65567773 (-)
FVB/NJ	ENSMUSG00205037688	lncRNA gene	Chr2:65029762-65033420 (-)
JF1/MsJ	ENSUMUG00000006753	lncRNA gene	Chr2:65208997-65214012 (-)
LP/J	ENSMUSG00230023307	lncRNA gene	Chr2:67365768-67369430 (-)
NOD/ShiLtJ	ENSMUSG00190039511	lncRNA gene	Chr2:65649795-65653457 (-)
NZO/HlLtJ	ENSMUSG00225015466	lncRNA gene	Chr2:75102409-75106067 (-)
PWK/PhJ	ENSLUMG00010033515	lncRNA gene	Chr2:65402659-65407669 (-)
SPRET/EiJ	ENSMSPG00010037399	lncRNA gene	Chr2:66761308-66765060 (-)
WSB/EiJ	ENSIUOG00005020428	lncRNA gene	Chr2:65697866-65701524 (-)

Homology

• Gene Tree
  Gm36002
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm36002
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000115973 (Evidence)
• NCBI Gene
  102639771

Representative Sequences			Length	Strain/Species
genomic	102639771	NCBI Gene Model | MGI Sequence Detail	3742	C57BL/6J
transcript	NR_168317	RefSeq | MGI Sequence Detail	323	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36002:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24420	Chr2:68412649-68412694 (-)	11 bp