Gm35992 Gene Detail

Summary

• Symbol
  Gm35992
• Name
  predicted gene, 35992

• Feature Type
  lncRNA gene
• IDs
  MGI:5595151
  NCBI Gene: 102639756
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:92307350-92321352 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  446 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595151	lncRNA gene	Chr1:92307307-92321362 (+)
129S1/SvImJ	ENSMUSG00200038464	lncRNA gene	Chr1:89527671-89541710 (+)
A/J	ENSMUSG00195033128	lncRNA gene	Chr1:89086465-89100513 (+)
AKR/J	ENSMUSG00220046062	lncRNA gene	Chr1:89236836-89250874 (+)
BALB/cJ	ENSMUSG00180017003	lncRNA gene	Chr1:89399347-89413387 (+)
C3H/HeJ	ENSMUSG00175001614	lncRNA gene	Chr1:89270426-89284627 (+)
C57BL/6NJ	ENSMUSG00215038310	lncRNA gene	Chr1:89209036-89223077 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008028	lncRNA gene	Chr1:88825840-88839962 (+)
CBA/J	ENSMUSG00210012536	lncRNA gene	Chr1:89115645-89129854 (+)
DBA/2J	ENSMUSG00185014362	lncRNA gene	Chr1:93584293-93598344 (+)
FVB/NJ	ENSMUSG00205045761	lncRNA gene	Chr1:88525070-88539112 (+)
JF1/MsJ	ENSUMUG00000021748	lncRNA gene	Chr1:92332700-92346782 (+)
LP/J	ENSMUSG00230023653	lncRNA gene	Chr1:92863821-92877859 (+)
NOD/ShiLtJ	ENSMUSG00190032208	lncRNA gene	Chr1:89167086-89181125 (+)
NZO/HlLtJ	ENSMUSG00225004085	lncRNA gene	Chr1:96765519-96779597 (+)
PWK/PhJ	ENSLUMG00010047637	lncRNA gene	Chr1:88722656-88736743 (+)
SPRET/EiJ	ENSMSPG00010048153	lncRNA gene	Chr1:90755772-90769908 (+)
WSB/EiJ	ENSIUOG00005042269	lncRNA gene	Chr1:88828724-88842787 (+)

Homology

• Gene Tree
  Gm35992
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm35992
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000120000 (Evidence)
• NCBI Gene
  102639756

Representative Sequences			Length	Strain/Species
genomic	102639756	NCBI Gene Model | MGI Sequence Detail	14003	C57BL/6J
transcript	NR_175842	RefSeq | MGI Sequence Detail	581	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm35992:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8118	Chr1:92307346-92307362 (+)	4 bp