Gm35940 Gene Detail

Summary

• Symbol
  Gm35940
• Name
  predicted gene, 35940

• Feature Type
  lncRNA gene
• IDs
  MGI:5595099
  NCBI Gene: 102639686
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:41716918-41745813 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  931 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595099	lncRNA gene	Chr9:41716708-41749714 (+)
129S1/SvImJ	ENSMUSG00200040474	lncRNA gene	Chr9:38798809-38831712 (+)
A/J	ENSMUSG00195051247	lncRNA gene	Chr9:38556925-38589813 (+)
AKR/J	ENSMUSG00220047086	lncRNA gene	Chr9:38642867-38676502 (+)
BALB/cJ	ENSMUSG00180047772	lncRNA gene	Chr9:38668665-38701554 (+)
C3H/HeJ	ENSMUSG00175049099	lncRNA gene	Chr9:38680586-38713473 (+)
C57BL/6NJ	ENSMUSG00215038239	lncRNA gene	Chr9:38634609-38667801 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044849	lncRNA gene	Chr9:38625098-38658378 (+)
CBA/J	ENSMUSG00210047348	lncRNA gene	Chr9:38726417-38759323 (+)
DBA/2J	ENSMUSG00185039046	lncRNA gene	Chr9:38780643-38814276 (+)
FVB/NJ	ENSMUSG00205043256	lncRNA gene	Chr9:39043505-39076407 (+)
JF1/MsJ	ENSUMUG00000045673	lncRNA gene	Chr9:38832239-38865415 (+)
LP/J	ENSMUSG00230034074	lncRNA gene	Chr9:39089533-39122433 (+)
NOD/ShiLtJ	ENSMUSG00190036366	lncRNA gene	Chr9:38867991-38900876 (+)
NZO/HlLtJ	ENSMUSG00225021749	lncRNA gene	Chr9:39058042-39090942 (+)
PWK/PhJ	ENSLUMG00010047024	lncRNA gene	Chr9:38786191-38819375 (+)
SPRET/EiJ	ENSMSPG00010035015	lncRNA gene	Chr9:39536214-39569528 (+)
WSB/EiJ	ENSIUOG00005044687	lncRNA gene	Chr9:38289653-38323018 (+)

Homology

• Gene Tree
  Gm35940
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000110981 (Evidence)
• NCBI Gene
  102639686

Representative Sequences			Length	Strain/Species
genomic	102639686	NCBI Gene Model | MGI Sequence Detail	28896	C57BL/6J
transcript	XR_870662	RefSeq | MGI Sequence Detail	2710	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;