Gm35890 Gene Detail

Summary

• Symbol
  Gm35890
• Name
  predicted gene, 35890

• Feature Type
  lncRNA gene
• IDs
  MGI:5595049
  NCBI Gene: 102639625
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:13718854-13726085 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  339 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595049	lncRNA gene	Chr12:13718589-13726164 (+)
129S1/SvImJ	ENSMUSG00200024445	lncRNA gene	Chr12:10727004-10734235 (+)
A/J	ENSMUSG00195021034	lncRNA gene	Chr12:10748014-10755247 (+)
AKR/J	ENSMUSG00220029228	lncRNA gene	Chr12:10838316-10845547 (+)
BALB/cJ	ENSMUSG00180009576	lncRNA gene	Chr12:10733972-10741205 (+)
C3H/HeJ	ENSMUSG00175005838	lncRNA gene	Chr12:10802123-10809354 (+)
C57BL/6NJ	ENSMUSG00215006510	lncRNA gene	Chr12:10565807-10573039 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005878	lncRNA gene	Chr12:10301462-10308587 (+)
CBA/J	ENSMUSG00210007740	lncRNA gene	Chr12:10816348-10823579 (+)
DBA/2J	ENSMUSG00185003768	lncRNA gene	Chr12:10734086-10741315 (+)
FVB/NJ	ENSMUSG00205001791	lncRNA gene	Chr12:10540510-10547742 (+)
JF1/MsJ	ENSUMUG00000010896	lncRNA gene	Chr12:10644305-10651525 (+)
LP/J	ENSMUSG00230022418	lncRNA gene	Chr12:12546424-12553655 (+)
NOD/ShiLtJ	ENSMUSG00190014148	lncRNA gene	Chr12:11971260-11978489 (+)
NZO/HlLtJ	ENSMUSG00225030023	lncRNA gene	Chr12:14638287-14645518 (+)
PWK/PhJ	ENSLUMG00010005223	lncRNA gene	Chr12:10400868-10408095 (+)
SPRET/EiJ	ENSMSPG00010002968	lncRNA gene	Chr12:11250783-11258192 (+)
WSB/EiJ	ENSIUOG00005001845	lncRNA gene	Chr12:10766122-10773357 (+)

Homology

• Gene Tree
  Gm35890
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000113283 (Evidence)
• NCBI Gene
  102639625

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113283	Ensembl Gene Model | MGI Sequence Detail	7232	C57BL/6J
transcript	ENSMUST00000221195	Ensembl | MGI Sequence Detail	564	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;