Gm35857 Pseudogene Detail

Summary

• Symbol
  Gm35857
• Name
  predicted gene, 35857

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5595016
  NCBI Gene: 102639577
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:73284875-73285052 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595016	pseudogene	Chr8:73284805-73285156 (+)
129S1/SvImJ	ENSMUSG00200033391	pseudogene	Chr8:67651255-67651432 (+)
A/J	ENSMUSG00195017781	pseudogene	Chr8:67996472-67996649 (+)
AKR/J	ENSMUSG00220025307	pseudogene	Chr8:68129470-68129647 (+)
BALB/cJ	ENSMUSG00180030238	pseudogene	Chr8:67834979-67835156 (+)
C3H/HeJ	ENSMUSG00175022722	pseudogene	Chr8:67973017-67973194 (+)
C57BL/6NJ	ENSMUSG00215039031	pseudogene	Chr8:67557371-67557548 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039349	pseudogene	Chr6:69622567-69622743 (+)
CAST/EiJ	ENSTCUG00005039692	pseudogene	Chr8:67585892-67586069 (+)
CBA/J	ENSMUSG00210034741	pseudogene	Chr8:67879873-67880050 (+)
DBA/2J	ENSMUSG00185013370	pseudogene	Chr8:74040262-74040439 (+)
FVB/NJ	ENSMUSG00205043379	pseudogene	Chr8:67129956-67130133 (+)
JF1/MsJ	ENSUMUG00000040598	pseudogene	Chr8:76364790-76364967 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190032946	pseudogene	Chr8:67869362-67869539 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036468	pseudogene	Chr8:67768142-67768319 (+)
SPRET/EiJ	ENSMSPG00010042861	pseudogene	Chr8:69521341-69521518 (+)
WSB/EiJ	ENSIUOG00005026354	pseudogene	Chr8:68645145-68645322 (+)

Homology

• Gene Tree
  Gm35857
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm35857
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000110532 (Evidence)
• NCBI Gene
  102639577

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110532	Ensembl Gene Model | MGI Sequence Detail	178	C57BL/6J
transcript	ENSMUST00000212739	Ensembl | MGI Sequence Detail	178	Not Applicable
polypeptide	XP_036010324	RefSeq | MGI Sequence Detail	63	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35857:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77989	Chr8:73284813-73284847 (+)	-45 bp