Gm35842 Gene Detail

Summary

• Symbol
  Gm35842
• Name
  predicted gene, 35842

• Feature Type
  lncRNA gene
• IDs
  MGI:5595001
  NCBI Gene: 115486531
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:70198617-70204672 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  263 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595001	lncRNA gene	Chr7:70196822-70206639 (+)
129S1/SvImJ	ENSMUSG00200011954	lncRNA gene	Chr7:56946087-56952145 (+)
A/J	ENSMUSG00195015282	lncRNA gene	Chr7:61348553-61354613 (+)
AKR/J	ENSMUSG00220021203	lncRNA gene	Chr7:54858488-54864547 (+)
BALB/cJ	ENSMUSG00180004780	lncRNA gene	Chr7:58058359-58064418 (+)
C3H/HeJ	ENSMUSG00175011372	lncRNA gene	Chr7:58850713-58856771 (+)
C57BL/6NJ	ENSMUSG00215016981	lncRNA gene	Chr7:57976294-57982351 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004365	lncRNA gene	Chr7:61533875-61539919 (+)
CBA/J	ENSMUSG00210020012	lncRNA gene	Chr7:58689100-58695159 (+)
DBA/2J	ENSMUSG00185000992	lncRNA gene	Chr7:63031372-63037415 (+)
FVB/NJ	ENSMUSG00205004917	lncRNA gene	Chr7:58694389-58700432 (+)
JF1/MsJ	ENSUMUG00000009890	lncRNA gene	Chr7:67800397-67806469 (+)
LP/J	ENSMUSG00230021513	lncRNA gene	Chr7:69120362-69126420 (+)
NOD/ShiLtJ	ENSMUSG00190007621	lncRNA gene	Chr7:58797367-58803425 (+)
NZO/HlLtJ	ENSMUSG00225017279	lncRNA gene	Chr7:67397481-67403524 (+)
PWK/PhJ	ENSLUMG00010019349	lncRNA gene	Chr7:57325034-57331068 (+)
SPRET/EiJ	ENSMSPG00010003805	lncRNA gene	Chr7:57661790-57667853 (+)
WSB/EiJ	ENSIUOG00005005408	lncRNA gene	Chr7:59209864-59215908 (+)

Homology

• Gene Tree
  Gm35842
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000109028 (Evidence)
• NCBI Gene
  115486531

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109028	Ensembl Gene Model | MGI Sequence Detail	6056	C57BL/6J
transcript	ENSMUST00000207859	Ensembl | MGI Sequence Detail	4464	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;