Gm35748 Gene Detail

Summary

• Symbol
  Gm35748
• Name
  predicted gene, 35748

• Feature Type
  lncRNA gene
• IDs
  MGI:5594907
  NCBI Gene: 102639434
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:78952683-78953706 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594907	lncRNA gene	Chr2:78895867-78953723 (+)
129S1/SvImJ	ENSMUSG00200004556	lncRNA gene	Chr2:75991932-75992567 (+)
A/J	ENSMUSG00195021391	lncRNA gene	Chr2:76164806-76165441 (+)
AKR/J	ENSMUSG00220002456	lncRNA gene	Chr2:76185970-76186605 (+)
BALB/cJ	ENSMUSG00180007244	lncRNA gene	Chr2:76100817-76101452 (+)
C3H/HeJ	ENSMUSG00175012103	lncRNA gene	Chr2:76224856-76225491 (+)
C57BL/6NJ	ENSMUSG00215024435	lncRNA gene	Chr2:76069599-76070234 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032412	lncRNA gene	Chr2:75562390-75563025 (+)
CBA/J	ENSMUSG00210002488	lncRNA gene	Chr2:76263237-76263872 (+)
DBA/2J	ENSMUSG00185011850	lncRNA gene	Chr2:76099169-76099804 (+)
FVB/NJ	ENSMUSG00205020233	lncRNA gene	Chr2:75445254-75445889 (+)
JF1/MsJ	ENSUMUG00000043967	lncRNA gene	Chr2:75826362-75826996 (+)
LP/J	ENSMUSG00230027148	lncRNA gene	Chr2:77904941-77905576 (+)
NOD/ShiLtJ	ENSMUSG00190011271	lncRNA gene	Chr2:76164156-76164791 (+)
NZO/HlLtJ	ENSMUSG00225003840	lncRNA gene	Chr2:85663642-85664277 (+)
PWK/PhJ	ENSLUMG00010035160	lncRNA gene	Chr2:75991009-75991643 (+)
SPRET/EiJ	ENSMSPG00010022221	lncRNA gene	Chr2:77328719-77329351 (+)
WSB/EiJ	ENSIUOG00005011593	lncRNA gene	Chr2:79785694-79786329 (-)

Homology

• Gene Tree
  Gm35748
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm35748
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000121035 (Evidence)
• NCBI Gene
  102639434

Representative Sequences			Length	Strain/Species
genomic	102639434	NCBI Gene Model | MGI Sequence Detail	1024	C57BL/6J
transcript	XR_374745	RefSeq | MGI Sequence Detail	758	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm35748:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18536	Chr2:78953054-78953065 (+)	377 bp
Tssr18537	Chr2:78953069-78953097 (+)	400 bp
Tssr18538	Chr2:78953108-78953132 (+)	437 bp
Tssr18539	Chr2:78953134-78953155 (+)	462 bp