Gm35742 Gene Detail

Summary

• Symbol
  Gm35742
• Name
  predicted gene, 35742

• Feature Type
  lncRNA gene
• IDs
  MGI:5594901
  NCBI Gene: 102639424
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:172817890-172825408 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  293 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594901	lncRNA gene	Chr1:172817519-172839004 (+)
129S1/SvImJ	ENSMUSG00200047424	lncRNA gene	Chr1:170757292-170767999 (+)
A/J	ENSMUSG00195049422	lncRNA gene	Chr1:170053135-170062521 (+)
AKR/J	ENSMUSG00220034466	lncRNA gene	Chr1:169788562-169799274 (+)
BALB/cJ	ENSMUSG00180047109	lncRNA gene	Chr1:170386013-170396720 (+)
C3H/HeJ	ENSMUSG00175048725	lncRNA gene	Chr1:170396892-170407604 (+)
C57BL/6NJ	ENSMUSG00215044931	lncRNA gene	Chr1:169778100-169787598 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047055	lncRNA gene	Chr1:168333735-168344516 (+)
CBA/J	ENSMUSG00210043646	lncRNA gene	Chr1:170264970-170275670 (+)
DBA/2J	ENSMUSG00185031881	lncRNA gene	Chr1:174567106-174577820 (+)
FVB/NJ	ENSMUSG00205041652	lncRNA gene	Chr1:169251587-169262306 (+)
JF1/MsJ	ENSUMUG00000021535	lncRNA gene	Chr1:173492397-173501965 (+)
LP/J	ENSMUSG00230032851	lncRNA gene	Chr1:174162109-174172832 (+)
NOD/ShiLtJ	ENSMUSG00190041682	lncRNA gene	Chr1:170072376-170083075 (+)
NZO/HlLtJ	ENSMUSG00225005019	lncRNA gene	Chr1:177741528-177752249 (+)
PWK/PhJ	ENSLUMG00010035696	lncRNA gene	Chr1:169014325-169023940 (+)
SPRET/EiJ	ENSMSPG00010049519	lncRNA gene	Chr1:172392531-172408615 (+)
WSB/EiJ	ENSIUOG00005041059	lncRNA gene	Chr1:169393312-169402941 (+)

Homology

• Gene Tree
  Gm35742
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm35742
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000120473 (Evidence)
• NCBI Gene
  102639424

Representative Sequences			Length	Strain/Species
genomic	102639424	NCBI Gene Model | MGI Sequence Detail	7519	C57BL/6J
transcript	NR_166161	RefSeq | MGI Sequence Detail	950	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35742:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10257	Chr1:172817882-172817904 (+)	3 bp