Gm35692 Gene Detail

Summary

• Symbol
  Gm35692
• Name
  predicted gene, 35692

• Feature Type
  lncRNA gene
• IDs
  MGI:5594851
  NCBI Gene: 102639361
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:46132801-46139810 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  274 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594851	lncRNA gene	Chr17:46117130-46139836 (-)
129S1/SvImJ	ENSMUSG00200028450	lncRNA gene	Chr17:41320136-41336270 (-)
A/J	ENSMUSG00195022207	lncRNA gene	Chr17:42820094-42836214 (-)
AKR/J	ENSMUSG00220036912	lncRNA gene	Chr17:41805423-41821445 (-)
BALB/cJ	ENSMUSG00180026357	lncRNA gene	Chr17:42570185-42586210 (-)
C3H/HeJ	ENSMUSG00175016648	lncRNA gene	Chr17:41884186-41900204 (-)
C57BL/6NJ	ENSMUSG00215035773	lncRNA gene	Chr17:41439571-41455690 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025579	lncRNA gene	Chr17:42615311-42631924 (-)
CBA/J	ENSMUSG00210039130	lncRNA gene	Chr17:41633902-41649923 (-)
DBA/2J	ENSMUSG00185030370	lncRNA gene	Chr17:44539382-44555502 (-)
FVB/NJ	ENSMUSG00205052698	lncRNA gene	Chr17:42113113-42129143 (-)
JF1/MsJ	ENSUMUG00000036193	lncRNA gene	Chr17:44147045-44163515 (-)
LP/J	ENSMUSG00230041621	lncRNA gene	Chr17:45427364-45443481 (-)
NOD/ShiLtJ	ENSMUSG00190017884	lncRNA gene	Chr17:41512237-41528177 (-)
NZO/HlLtJ	ENSMUSG00225043805	lncRNA gene	Chr17:47689508-47705614 (-)
PWK/PhJ	ENSLUMG00010035734	lncRNA gene	Chr17:41386620-41402590 (-)
SPRET/EiJ	ENSMSPG00010037491	lncRNA gene	Chr17:41612073-41628029 (-)
WSB/EiJ	ENSIUOG00005027527	lncRNA gene	Chr17:42486407-42502533 (-)

Homology

• Gene Tree
  Gm35692
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000117139 (Evidence)
• NCBI Gene
  102639361

Representative Sequences			Length	Strain/Species
genomic	102639361	NCBI Gene Model | MGI Sequence Detail	7010	C57BL/6J
transcript	AK053380	GenBank | ENA | DDBJ | MGI Sequence Detail	1325	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm35692:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr148284	Chr17:46139779-46139808 (-)	16 bp