Gm35686 Gene Detail

Summary

• Symbol
  Gm35686
• Name
  predicted gene, 35686

• Feature Type
  lncRNA gene
• IDs
  MGI:5594845
  NCBI Gene: 102639353
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:172757582-172778720 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  691 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594845	lncRNA gene	Chr1:172757582-172787830 (+)
129S1/SvImJ	ENSMUSG00200047414	lncRNA gene	Chr1:170696174-170718263 (+)
A/J	ENSMUSG00195049445	lncRNA gene	Chr1:169998834-170020910 (+)
AKR/J	ENSMUSG00220034450	lncRNA gene	Chr1:169727463-169749542 (+)
BALB/cJ	ENSMUSG00180047095	lncRNA gene	Chr1:170324899-170346981 (+)
C3H/HeJ	ENSMUSG00175048707	lncRNA gene	Chr1:170335785-170357871 (+)
C57BL/6NJ	ENSMUSG00215044925	lncRNA gene	Chr1:169717859-169738968 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047051	lncRNA gene	Chr1:168272654-168294725 (+)
CBA/J	ENSMUSG00210043624	lncRNA gene	Chr1:170203852-170225938 (+)
DBA/2J	ENSMUSG00185031870	lncRNA gene	Chr1:174505990-174528079 (+)
FVB/NJ	ENSMUSG00205041620	lncRNA gene	Chr1:169190480-169212560 (+)
JF1/MsJ	ENSUMUG00000021501	lncRNA gene	Chr1:173431989-173453103 (+)
LP/J	ENSMUSG00230032845	lncRNA gene	Chr1:174101001-174123089 (+)
NOD/ShiLtJ	ENSMUSG00190041642	lncRNA gene	Chr1:170011262-170033348 (+)
NZO/HlLtJ	ENSMUSG00225005013	lncRNA gene	Chr1:177680442-177702518 (+)
PWK/PhJ	ENSLUMG00010035673	lncRNA gene	Chr1:168960089-168982176 (+)
SPRET/EiJ	ENSMSPG00010049508	lncRNA gene	Chr1:172324105-172360143 (+)
WSB/EiJ	ENSIUOG00005041038	lncRNA gene	Chr1:169339010-169361108 (+)

Homology

• Gene Tree
  Gm35686
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm35686
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000120753 (Evidence)
• NCBI Gene
  102639353

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120753	Ensembl Gene Model | MGI Sequence Detail	21139	C57BL/6J
transcript	ENSMUST00000255348	Ensembl | MGI Sequence Detail	882	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35686:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10256	Chr1:172757605-172757620 (+)	31 bp