Crsfirre Gene Detail

Summary

• Symbol
  Crsfirre
• Name
  Crossfirre, functional intergenic repeating RNA element X opposite strand transcript
• Synonyms
  Gm35612

• Feature Type
  lncRNA gene
• IDs
  MGI:5594771
  NCBI Gene: 102639259
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:49626266-49651475 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  602 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594771	lncRNA gene	ChrX:49626177-49680597 (+)
129S1/SvImJ	ENSMUSG00200038044	lncRNA gene	ChrX:33468144-33522356 (+)
A/J	ENSMUSG00195017624	lncRNA gene	ChrX:36272943-36327159 (+)
AKR/J	ENSMUSG00220040630	lncRNA gene	ChrX:33132413-33186630 (+)
BALB/cJ	ENSMUSG00180036330	lncRNA gene	ChrX:33987473-34041691 (+)
C3H/HeJ	ENSMUSG00175044186	lncRNA gene	ChrX:37006819-37061034 (+)
C57BL/6NJ	ENSMUSG00215048678	lncRNA gene	ChrX:34013425-34067642 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039819	lncRNA gene	ChrX:35971234-36024940 (+)
CBA/J	ENSMUSG00210041102	lncRNA gene	ChrX:34249578-34303782 (+)
DBA/2J	ENSMUSG00185034161	lncRNA gene	ChrX:44955343-45009552 (+)
FVB/NJ	ENSMUSG00205033112	lncRNA gene	ChrX:32608585-32662793 (+)
JF1/MsJ	ENSUMUG00000032901	lncRNA gene	ChrX:63992688-64046801 (+)
LP/J	ENSMUSG00230029868	lncRNA gene	ChrX:51488245-51542466 (+)
NOD/ShiLtJ	ENSMUSG00190038815	lncRNA gene	ChrX:33348811-33403022 (+)
NZO/HlLtJ	ENSMUSG00225043573	lncRNA gene	ChrX:56681880-56736092 (+)
PWK/PhJ	ENSLUMG00010043399	lncRNA gene	ChrX:33676176-33730283 (+)
SPRET/EiJ	ENSMSPG00010025615	lncRNA gene	ChrX:35317037-35377936 (+)
WSB/EiJ	ENSIUOG00005048717	lncRNA gene	ChrX:34519203-34573407 (+)

Homology

• Gene Tree
  Crsfirre
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  2
• Gene trapped
  1
• Genomic Mutations
  1 involving Crsfirre
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  1

• Ensembl
  ENSMUSG00000119984 (Evidence)
• NCBI Gene
  102639259

Representative Sequences			Length	Strain/Species
genomic	102639259	NCBI Gene Model | MGI Sequence Detail	25210	C57BL/6J
transcript	NR_131207	RefSeq | MGI Sequence Detail	381	C57BL/6

Other
Accession IDs

MGI:8166440

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:361876 Hasenbein TP, et al., X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes. Nat Commun. 2024 Dec 5;15(1):10631

TSS for Crsfirre:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160930	ChrX:49626208-49626249 (+)	-37 bp