Gm35585 Gene Detail

Summary

• Symbol
  Gm35585
• Name
  predicted gene, 35585
• Synonyms
  Gm42586

• Feature Type
  lncRNA gene
• IDs
  MGI:5594744
  NCBI Gene: 102639226
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:127652871-127661254 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  337 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594744	lncRNA gene	Chr3:127630350-127665610 (+)
129S1/SvImJ	ENSMUSG00200003899	lncRNA gene	Chr3:124390398-124394078 (+)
A/J	ENSMUSG00195008309	lncRNA gene	Chr3:124529189-124532869 (+)
AKR/J	ENSMUSG00220022592	lncRNA gene	Chr3:122970328-122973991 (+)
BALB/cJ	ENSMUSG00180003792	lncRNA gene	Chr3:124456299-124459971 (+)
C3H/HeJ	ENSMUSG00175013942	lncRNA gene	Chr3:124009964-124013636 (+)
C57BL/6NJ	ENSMUSG00215022619	lncRNA gene	Chr3:124801197-124804861 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005725	lincRNA gene	Chr3:121153782-121157371 (+)
CAST/EiJ	ENSTCUG00005003714	lncRNA gene	Chr3:125099464-125103122 (+)
CBA/J	ENSMUSG00210004355	lncRNA gene	Chr3:124633156-124636832 (+)
DBA/2J	ENSMUSG00185026526	lncRNA gene	Chr3:125254093-125257727 (+)
FVB/NJ	ENSMUSG00205030109	lncRNA gene	Chr3:123599653-123603317 (+)
JF1/MsJ	ENSUMUG00000031725	lncRNA gene	Chr3:124001656-124005338 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001983	lncRNA gene	Chr3:125656601-125660244 (+)
NZO/HlLtJ	ENSMUSG00225004065	lncRNA gene	Chr3:129688752-129692415 (+)
PWK/PhJ	ENSLUMG00010015674	lncRNA gene	Chr3:124022893-124026574 (+)
SPRET/EiJ	ENSMSPG00010013666	lncRNA gene	Chr3:124941277-124944941 (+)
WSB/EiJ	ENSIUOG00005017179	lncRNA gene	Chr3:124817720-124821369 (+)

Homology

• Gene Tree
  Gm35585
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm35585
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2

• Ensembl
  ENSMUSG00000105550 (Evidence)
• NCBI Gene
  102639226

Representative Sequences			Length	Strain/Species
genomic	102639226	NCBI Gene Model | MGI Sequence Detail	8384	C57BL/6J
transcript	AK035376	GenBank | ENA | DDBJ | MGI Sequence Detail	1570	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5662723

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm35585:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31614	Chr3:127655234-127655264 (+)	2,378 bp