Gm35558 Gene Detail

Summary

• Symbol
  Gm35558
• Name
  predicted gene, 35558

• Feature Type
  lncRNA gene
• IDs
  MGI:5594717
  NCBI Gene: 102639192
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:110563042-110578147 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  588 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594717	lncRNA gene	Chr12:110563042-110578147 (-)
129S1/SvImJ	ENSMUSG00200029252	lncRNA gene	Chr12:102337947-102338445 (-)
129S1/SvImJ	ENSMUSG00200029293	unclassified gene	Chr12:102341084-102343302 (-)
A/J	ENSMUSG00195047403	unclassified gene	Chr12:104859009-104861227 (-)
A/J	ENSMUSG00195047367	lncRNA gene	Chr12:104855758-104856256 (-)
AKR/J	ENSMUSG00220038352	lncRNA gene	Chr12:102755435-102755933 (-)
AKR/J	ENSMUSG00220038387	unclassified gene	Chr12:102758685-102760903 (-)
BALB/cJ	ENSMUSG00180049911	lncRNA gene	Chr12:104101046-104101544 (-)
BALB/cJ	ENSMUSG00180049933	unclassified gene	Chr12:104104183-104106401 (-)
C3H/HeJ	ENSMUSG00175039972	lncRNA gene	Chr12:106669480-106669978 (-)
C3H/HeJ	ENSMUSG00175040041	unclassified gene	Chr12:106672731-106674949 (-)
C57BL/6NJ	ENSMUSG00215051146	lncRNA gene	Chr12:103373887-103374385 (-)
C57BL/6NJ	ENSMUSG00215051166	unclassified gene	Chr12:103377024-103379242 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020402	unclassified gene	Chr12:102846794-102849027 (-)
CAST/EiJ	ENSTCUG00005020422	lncRNA gene	Chr12:102843537-102844034 (-)
CBA/J	ENSMUSG00210035877	lncRNA gene	Chr12:103730935-103731433 (-)
CBA/J	ENSMUSG00210035933	unclassified gene	Chr12:103734186-103736404 (-)
DBA/2J	ENSMUSG00185030917	lncRNA gene	Chr12:105558589-105559087 (-)
DBA/2J	ENSMUSG00185030960	unclassified gene	Chr12:105561726-105563944 (-)
FVB/NJ	ENSMUSG00205035794	unclassified gene	Chr12:102788951-102791169 (-)
FVB/NJ	ENSMUSG00205035694	lncRNA gene	Chr12:102785814-102786312 (-)
JF1/MsJ	ENSUMUG00000041316	unclassified gene	Chr12:110327248-110329472 (-)
JF1/MsJ	ENSUMUG00000041230	lncRNA gene	Chr12:110323994-110324494 (-)
LP/J	ENSMUSG00230044694	unclassified gene	Chr12:112605733-112607951 (-)
LP/J	ENSMUSG00230044691	lncRNA gene	Chr12:112602596-112603094 (-)
NOD/ShiLtJ	ENSMUSG00190034093	lncRNA gene	Chr12:82444166-82444664 (+)
NOD/ShiLtJ	ENSMUSG00190034176	unclassified gene	Chr12:82439196-82441414 (+)
NZO/HlLtJ	ENSMUSG00225043107	lncRNA gene	Chr12:114350765-114351263 (-)
NZO/HlLtJ	ENSMUSG00225043114	unclassified gene	Chr12:114353902-114356120 (-)
PWK/PhJ	ENSLUMG00010051952	unclassified gene	Chr12:103784560-103786772 (-)
PWK/PhJ	ENSLUMG00010051966	lncRNA gene	Chr12:103781292-103781792 (-)
SPRET/EiJ	ENSMSPG00010025540	unclassified gene	Chr12:106070297-106072523 (-)
SPRET/EiJ	ENSMSPG00010025585	lncRNA gene	Chr12:106067078-106067575 (-)
WSB/EiJ	ENSIUOG00005009455	unclassified gene	Chr12:102772059-102774277 (-)
WSB/EiJ	ENSIUOG00005009432	lncRNA gene	Chr12:102768922-102769420 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  2

• Ensembl
  ENSMUSG00000113662 (Evidence), ENSMUSG00000113702 (Evidence)
• NCBI Gene
  102639192

Representative Sequences			Length	Strain/Species
genomic	102639192	NCBI Gene Model | MGI Sequence Detail	15106	C57BL/6J
transcript	XR_381950	RefSeq | MGI Sequence Detail	14718	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm35558:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117783	Chr12:110568375-110568406 (-)	9,756 bp