Gm35554 Gene Detail

Summary

• Symbol
  Gm35554
• Name
  predicted gene, 35554

• Feature Type
  lncRNA gene
• IDs
  MGI:5594713
  NCBI Gene: 102639185
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:27322149-27333809 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  492 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594713	lncRNA gene	Chr19:27322113-27366480 (+)
129S1/SvImJ	ENSMUSG00200020923	lncRNA gene	Chr19:24038731-24067831 (+)
A/J	ENSMUSG00195036267	lncRNA gene	Chr19:24214148-24243279 (+)
AKR/J	ENSMUSG00220019949	lncRNA gene	Chr19:24254566-24288656 (+)
BALB/cJ	ENSMUSG00180013711	lncRNA gene	Chr19:24535494-24564682 (+)
C3H/HeJ	ENSMUSG00175026088	lncRNA gene	Chr19:23911871-23941060 (+)
C57BL/6NJ	ENSMUSG00215030761	lncRNA gene	Chr19:23952213-23981389 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018584	lncRNA gene	Chr19:23791058-23819489 (+)
CBA/J	ENSMUSG00210014894	lncRNA gene	Chr19:24142854-24172034 (+)
DBA/2J	ENSMUSG00185026258	lncRNA gene	Chr19:24529584-24558764 (+)
FVB/NJ	ENSMUSG00205013999	lncRNA gene	Chr19:23917483-23951560 (+)
JF1/MsJ	ENSUMUG00000040355	lncRNA gene	Chr19:24748921-24775221 (+)
LP/J	ENSMUSG00230029794	lncRNA gene	Chr19:25348151-25377243 (+)
NOD/ShiLtJ	ENSMUSG00190023594	lncRNA gene	Chr19:23906348-23935521 (+)
NZO/HlLtJ	ENSMUSG00225034540	lncRNA gene	Chr19:29099011-29128103 (+)
PWK/PhJ	ENSLUMG00010036011	lncRNA gene	Chr19:24123006-24149172 (+)
SPRET/EiJ	ENSMSPG00010036441	lncRNA gene	Chr19:24079480-24107756 (+)
WSB/EiJ	ENSIUOG00005028467	lncRNA gene	Chr19:23639148-23668349 (+)

Homology

• Gene Tree
  Gm35554
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  4

• Ensembl
  ENSMUSG00000117752 (Evidence)
• NCBI Gene
  102639185

Representative Sequences			Length	Strain/Species
genomic	102639185	NCBI Gene Model | MGI Sequence Detail	11661	C57BL/6J
transcript	NR_167733	RefSeq | MGI Sequence Detail	1257	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm35554:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155742	Chr19:27322138-27322168 (+)	4 bp
Tssr155743	Chr19:27322169-27322182 (+)	27 bp