Gm35548 Gene Detail

Summary

• Symbol
  Gm35548
• Name
  predicted gene, 35548

• Feature Type
  lncRNA gene
• IDs
  MGI:5594707
  NCBI Gene: 102639177
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:82131984-82142261 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  506 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594707	lncRNA gene	Chr9:82131896-82142293 (-)
129S1/SvImJ	ENSMUSG00200019500	lncRNA gene	Chr9:79213887-79224172 (-)
A/J	ENSMUSG00195011369	lncRNA gene	Chr9:79029007-79039284 (-)
AKR/J	ENSMUSG00220015482	lncRNA gene	Chr9:79137869-79148182 (-)
BALB/cJ	ENSMUSG00180020749	lncRNA gene	Chr9:79136608-79146895 (-)
C3H/HeJ	ENSMUSG00175011913	lncRNA gene	Chr9:79194780-79205065 (-)
C57BL/6NJ	ENSMUSG00215020385	lncRNA gene	Chr9:79136542-79146823 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010218	lncRNA gene	Chr9:78785054-78795287 (-)
CBA/J	ENSMUSG00210013407	lncRNA gene	Chr9:79247935-79258232 (-)
DBA/2J	ENSMUSG00185008426	lncRNA gene	Chr9:79254475-79264762 (-)
FVB/NJ	ENSMUSG00205030980	lncRNA gene	Chr9:79433539-79443826 (-)
JF1/MsJ	ENSUMUG00000041290	lncRNA gene	Chr9:79148484-79158793 (-)
LP/J	ENSMUSG00230025114	lncRNA gene	Chr9:79352184-79362469 (-)
NOD/ShiLtJ	ENSMUSG00190035284	lncRNA gene	Chr9:79342645-79352954 (-)
NZO/HlLtJ	ENSMUSG00225025985	lncRNA gene	Chr9:79552325-79562610 (-)
PWK/PhJ	ENSLUMG00010016230	lncRNA gene	Chr9:79094809-79105027 (-)
SPRET/EiJ	ENSMSPG00010004247	lncRNA gene	Chr9:80417279-80428426 (-)
WSB/EiJ	ENSIUOG00005026322	lncRNA gene	Chr9:78731924-78742176 (-)

Homology

• Gene Tree
  Gm35548
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm35548
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000111697 (Evidence)
• NCBI Gene
  102639177

Representative Sequences			Length	Strain/Species
genomic	102639177	NCBI Gene Model | MGI Sequence Detail	10278	C57BL/6J
transcript	XR_379658	RefSeq | MGI Sequence Detail	441	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;