Gm35546 Gene Detail

Summary

• Symbol
  Gm35546
• Name
  predicted gene, 35546

• Feature Type
  lncRNA gene
• IDs
  MGI:5594705
  NCBI Gene: 102639175
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr1:186319519-186346706 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  630 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594705	lncRNA gene	Chr1:186316434-186393718 (+)
129S1/SvImJ	ENSMUSG00200004599	lncRNA gene	Chr1:184111006-184184939 (+)
A/J	ENSMUSG00195009645	lncRNA gene	Chr1:183688815-183762744 (+)
AKR/J	ENSMUSG00220022019	lncRNA gene	Chr1:182931022-183004952 (+)
BALB/cJ	ENSMUSG00180019041	lncRNA gene	Chr1:183750707-183824656 (+)
C3H/HeJ	ENSMUSG00175022472	lncRNA gene	Chr1:183926172-184000099 (+)
C57BL/6NJ	ENSMUSG00215029584	lncRNA gene	Chr1:183136711-183210611 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044313	lncRNA gene	Chr1:181720976-181788551 (+)
CBA/J	ENSMUSG00210003596	lncRNA gene	Chr1:183612436-183686363 (+)
DBA/2J	ENSMUSG00185036946	lncRNA gene	Chr1:188225694-188299654 (+)
FVB/NJ	ENSMUSG00205004699	lncRNA gene	Chr1:182615541-182687485 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230024975	lncRNA gene	Chr1:187773063-187846995 (+)
NOD/ShiLtJ	ENSMUSG00190033231	lncRNA gene	Chr1:183597042-183669950 (+)
NZO/HlLtJ	ENSMUSG00225011858	lncRNA gene	Chr1:191495192-191569082 (+)
PWK/PhJ	ENSLUMG00010017403	lncRNA gene	Chr1:182439612-182513581 (+)
SPRET/EiJ	ENSMSPG00010024978	lncRNA gene	Chr1:185966941-186034508 (+)
WSB/EiJ	ENSIUOG00005005271	lncRNA gene	Chr1:182903799-182980555 (+)

Homology

• Gene Tree
  Gm35546
  

Sequences &
Gene Models

• All Sequences
  69
• RefSeq
  3

• Ensembl
  ENSMUSG00000119954 (Evidence)
• NCBI Gene
  102639175

Representative Sequences			Length	Strain/Species
genomic	102639175	NCBI Gene Model | MGI Sequence Detail	27188	C57BL/6J
transcript	NR_168305	RefSeq | MGI Sequence Detail	1780	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10625	Chr1:186319492-186319507 (+)	-19 bp
Tssr10626	Chr1:186319512-186319547 (+)	11 bp
Tssr10627	Chr1:186319559-186319569 (+)	45 bp
Tssr10628	Chr1:186319601-186319610 (+)	87 bp
Tssr10629	Chr1:186319676-186319689 (+)	164 bp
Tssr10630	Chr1:186319700-186319712 (+)	187 bp