Gm35510 Gene Detail

Summary

• Symbol
  Gm35510
• Name
  predicted gene, 35510

• Feature Type
  lncRNA gene
• IDs
  MGI:5594669
  NCBI Gene: 102639122
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:118930198-118941543 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  447 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594669	lncRNA gene	Chr4:118927574-118941597 (+)
129S1/SvImJ	ENSMUSG00200014449	lncRNA gene	Chr4:112833650-112846034 (+)
A/J	ENSMUSG00195034071	lncRNA gene	Chr4:114079733-114091990 (+)
AKR/J	ENSMUSG00220022775	lncRNA gene	Chr4:113440922-113453247 (+)
BALB/cJ	ENSMUSG00180047113	lncRNA gene	Chr4:112142627-112155005 (+)
C3H/HeJ	ENSMUSG00175026304	lncRNA gene	Chr4:113155843-113168227 (+)
C57BL/6NJ	ENSMUSG00215040296	lncRNA gene	Chr4:114267213-114279533 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045586	lncRNA gene	Chr4:112962060-112974464 (+)
CBA/J	ENSMUSG00210052811	lncRNA gene	Chr4:112762342-112774716 (+)
DBA/2J	ENSMUSG00185048597	lncRNA gene	Chr4:114314764-114327005 (+)
FVB/NJ	ENSMUSG00205026287	lncRNA gene	Chr4:112238250-112250630 (+)
JF1/MsJ	ENSUMUG00000024483	lncRNA gene	Chr4:114220761-114233259 (+)
LP/J	ENSMUSG00230046334	lncRNA gene	Chr4:117651428-117663808 (+)
NOD/ShiLtJ	ENSMUSG00190045276	lncRNA gene	Chr4:112145159-112157479 (+)
NZO/HlLtJ	ENSMUSG00225016809	lncRNA gene	Chr4:123198240-123210516 (+)
PWK/PhJ	ENSLUMG00010046347	lncRNA gene	Chr4:111638976-111651491 (+)
SPRET/EiJ	ENSMSPG00010042171	lncRNA gene	Chr4:113722609-113735016 (+)
WSB/EiJ	ENSIUOG00005047554	lncRNA gene	Chr4:112454902-112467176 (+)

Homology

• Gene Tree
  Gm35510
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  202
• Chemically induced (other)
  2
• Gene trapped
  198
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm35510
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000120044 (Evidence)
• NCBI Gene
  102639122

Representative Sequences			Length	Strain/Species
genomic	102639122	NCBI Gene Model | MGI Sequence Detail	11346	C57BL/6J
transcript	XR_868067	RefSeq | MGI Sequence Detail	439	C57BL/6J

References

• Summaries
  All 15

  Phenotypes 12
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm35510:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38694	Chr4:118929275-118929286 (+)	-917 bp