Gm35500 Gene Detail

Summary

• Symbol
  Gm35500
• Name
  predicted gene, 35500

• Feature Type
  lncRNA gene
• IDs
  MGI:5594659
  NCBI Gene: 102639107
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:89442308-89516033 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  524 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594659	lncRNA gene	Chr16:89442308-89516033 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm35500
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  4

• NCBI Gene
  102639107

Representative Sequences			Length	Strain/Species
genomic	102639107	NCBI Gene Model | MGI Sequence Detail	73726	C57BL/6J
transcript	XR_385031	RefSeq | MGI Sequence Detail	1128	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for Gm35500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141992	Chr16:89498328-89498333 (-)	17,702 bp