Gm35460 Gene Detail

Summary

• Symbol
  Gm35460
• Name
  predicted gene, 35460

• Feature Type
  lncRNA gene
• IDs
  MGI:5594619
  NCBI Gene: 102639056
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:44603197-44635269 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  990 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594619	lncRNA gene	Chr19:44603179-44635318 (+)
129S1/SvImJ	ENSMUSG00200021697	lncRNA gene	Chr19:41317870-41350044 (+)
A/J	ENSMUSG00195017445	lncRNA gene	Chr19:41450954-41482481 (+)
AKR/J	ENSMUSG00220019783	lncRNA gene	Chr19:41245452-41277622 (+)
BALB/cJ	ENSMUSG00180022631	lncRNA gene	Chr19:41703328-41734850 (+)
C3H/HeJ	ENSMUSG00175006571	lncRNA gene	Chr19:41234336-41266541 (+)
C57BL/6NJ	ENSMUSG00215005233	lncRNA gene	Chr19:41293503-41325646 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016944	lncRNA gene	Chr19:40887597-40919640 (+)
CBA/J	ENSMUSG00210019361	lncRNA gene	Chr19:41313973-41346183 (+)
DBA/2J	ENSMUSG00185009044	lncRNA gene	Chr19:41826967-41858493 (+)
FVB/NJ	ENSMUSG00205039254	lncRNA gene	Chr19:40741742-40773792 (+)
JF1/MsJ	ENSUMUG00000046312	lncRNA gene	Chr19:41970936-42003003 (+)
LP/J	ENSMUSG00230025413	lncRNA gene	Chr19:42587811-42619975 (+)
NOD/ShiLtJ	ENSMUSG00190005707	lncRNA gene	Chr19:41177393-41209534 (+)
NZO/HlLtJ	ENSMUSG00225044348	lncRNA gene	Chr19:46182312-46214420 (+)
PWK/PhJ	ENSLUMG00010001313	lncRNA gene	Chr19:41135701-41167716 (+)
SPRET/EiJ	ENSMSPG00010007692	lncRNA gene	Chr19:40878349-40910545 (+)
WSB/EiJ	ENSIUOG00005006738	lncRNA gene	Chr19:40688066-40720204 (+)

Homology

• Gene Tree
  Gm35460
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  6

• Ensembl
  ENSMUSG00000117911 (Evidence)
• NCBI Gene
  102639056

Representative Sequences			Length	Strain/Species
genomic	102639056	NCBI Gene Model | MGI Sequence Detail	32073	C57BL/6J
transcript	XR_877875	RefSeq | MGI Sequence Detail	1871	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14