Gm35454 Gene Detail

Summary

• Symbol
  Gm35454
• Name
  predicted gene, 35454

• Feature Type
  lncRNA gene
• IDs
  MGI:5594613
  NCBI Gene: 102639046
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:122264947-122267199 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594613	lncRNA gene	Chr9:122264876-122267639 (-)
129S1/SvImJ	ENSMUSG00200032324	lncRNA gene	Chr9:119391718-119394065 (-)
A/J	ENSMUSG00195029534	lncRNA gene	Chr9:118537673-118540020 (-)
AKR/J	ENSMUSG00220019963	lncRNA gene	Chr9:118999223-119001570 (-)
BALB/cJ	ENSMUSG00180030635	lncRNA gene	Chr9:119075667-119078014 (-)
C3H/HeJ	ENSMUSG00175019292	lncRNA gene	Chr9:119313890-119316237 (-)
C57BL/6NJ	ENSMUSG00215036744	lncRNA gene	Chr9:119224963-119227310 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017665	lncRNA gene	Chr9:118911782-118914087 (-)
CBA/J	ENSMUSG00210042907	lncRNA gene	Chr9:119038909-119041256 (-)
DBA/2J	ENSMUSG00185018415	lncRNA gene	Chr9:119374559-119376906 (-)
FVB/NJ	ENSMUSG00205033552	lncRNA gene	Chr9:119204259-119206606 (-)
JF1/MsJ	ENSUMUG00000048345	lncRNA gene	Chr9:119185985-119188331 (-)
LP/J	ENSMUSG00230037984	lncRNA gene	Chr9:119531880-119534227 (-)
NOD/ShiLtJ	ENSMUSG00190015667	lncRNA gene	Chr9:118987028-118989375 (-)
NZO/HlLtJ	ENSMUSG00225023764	lncRNA gene	Chr9:119792244-119794591 (-)
PWK/PhJ	ENSLUMG00010039566	lncRNA gene	Chr9:119068269-119070617 (-)
SPRET/EiJ	ENSMSPG00010025335	lncRNA gene	Chr9:120787487-120789741 (-)
WSB/EiJ	ENSIUOG00005022318	lncRNA gene	Chr9:118411353-118413701 (-)

Homology

• Gene Tree
  Gm35454
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000111146 (Evidence)
• NCBI Gene
  102639046

Representative Sequences			Length	Strain/Species
genomic	102639046	NCBI Gene Model | MGI Sequence Detail	2253	C57BL/6J
transcript	XR_380025	RefSeq | MGI Sequence Detail	1006	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35454:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3055	Chr9:122267176-122267201 (-)	10 bp