Gm35439 Gene Detail

Summary

• Symbol
  Gm35439
• Name
  predicted gene, 35439
• Synonyms
  Gm43740

• Feature Type
  lncRNA gene
• IDs
  MGI:5594598
  NCBI Gene: 102639022
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:92077492-92090536 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  454 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594598	lncRNA gene	Chr3:92020417-92090536 (+)
129S1/SvImJ	ENSMUSG00200039748	lncRNA gene	Chr3:88939821-88947509 (+)
A/J	ENSMUSG00195053426	lncRNA gene	Chr3:88949511-88957197 (+)
AKR/J	ENSMUSG00220051847	lncRNA gene	Chr3:88165442-88173128 (+)
BALB/cJ	ENSMUSG00180050403	lncRNA gene	Chr3:89081973-89089663 (+)
C3H/HeJ	ENSMUSG00175049290	lncRNA gene	Chr3:88882120-88889806 (+)
C57BL/6NJ	ENSMUSG00215050670	lncRNA gene	Chr3:89321388-89329074 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005674	lincRNA gene	Chr3:86330247-86343668 (+)
CAST/EiJ	ENSTCUG00005048626	lncRNA gene	Chr3:89216823-89224528 (+)
CBA/J	ENSMUSG00210048632	lncRNA gene	Chr3:89001924-89009608 (+)
DBA/2J	ENSMUSG00185054053	lncRNA gene	Chr3:89137779-89145463 (+)
FVB/NJ	ENSMUSG00205049955	lncRNA gene	Chr3:87932745-87940431 (+)
JF1/MsJ	ENSUMUG00000053278	lncRNA gene	Chr3:88712729-88720327 (+)
LP/J	ENSMUSG00230035846	lncRNA gene	Chr3:91163083-91170769 (+)
NOD/ShiLtJ	ENSMUSG00190050795	lncRNA gene	Chr3:89336184-89343870 (+)
NZO/HlLtJ	ENSMUSG00225012527	lncRNA gene	Chr3:93921797-93929481 (+)
PWK/PhJ	ENSLUMG00010052157	lncRNA gene	Chr3:88814735-88822425 (+)
SPRET/EiJ	ENSMSPG00010050289	lncRNA gene	Chr3:89251779-89255734 (+)
WSB/EiJ	ENSIUOG00005050874	lncRNA gene	Chr3:89451947-89459635 (+)

Homology

• Gene Tree
  Gm35439
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm35439
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  5

• Ensembl
  ENSMUSG00000105476 (Evidence)
• NCBI Gene
  102639022

Representative Sequences			Length	Strain/Species
genomic	102639022	NCBI Gene Model | MGI Sequence Detail	13045	C57BL/6J
transcript	AK137696	GenBank | ENA | DDBJ | MGI Sequence Detail	4809	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663877

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm35439:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30280	Chr3:92077519-92077529 (+)	32 bp