Gm35417 Gene Detail

Summary

• Symbol
  Gm35417
• Name
  predicted gene, 35417

• Feature Type
  lncRNA gene
• IDs
  MGI:5594576
  NCBI Gene: 102638990
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:108779371-108805237 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  819 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594576	lncRNA gene	Chr6:108779371-108805525 (-)
129S1/SvImJ	ENSMUSG00200026403	lncRNA gene	Chr6:105818144-105844161 (-)
A/J	ENSMUSG00195017698	lncRNA gene	Chr6:105451149-105477169 (-)
AKR/J	ENSMUSG00220037664	lncRNA gene	Chr6:104359689-104385725 (-)
BALB/cJ	ENSMUSG00180002380	lncRNA gene	Chr6:105824217-105850230 (-)
C3H/HeJ	ENSMUSG00175017186	lncRNA gene	Chr6:71553915-71579930 (+)
C57BL/6NJ	ENSMUSG00215026265	lncRNA gene	Chr6:105849571-105875566 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030731	lncRNA gene	Chr6:105729244-105755930 (-)
CBA/J	ENSMUSG00210020947	lncRNA gene	Chr6:105681013-105707041 (-)
DBA/2J	ENSMUSG00185018858	lncRNA gene	Chr6:106121850-106148600 (-)
FVB/NJ	ENSMUSG00205026618	lncRNA gene	Chr6:104766189-104792212 (-)
JF1/MsJ	ENSUMUG00000029164	lncRNA gene	Chr6:104871250-104898005 (-)
LP/J	ENSMUSG00230001810	lncRNA gene	Chr6:107324568-107350584 (-)
NOD/ShiLtJ	ENSMUSG00190018540	lncRNA gene	Chr6:105284028-105310027 (-)
NZO/HlLtJ	ENSMUSG00225005687	lncRNA gene	Chr6:109262565-109288580 (-)
PWK/PhJ	ENSLUMG00010028154	lncRNA gene	Chr6:104366174-104392960 (-)
SPRET/EiJ	ENSMSPG00010015114	lncRNA gene	Chr6:106960044-106986698 (-)
WSB/EiJ	ENSIUOG00005025508	lncRNA gene	Chr6:106072510-106099015 (-)

Homology

• Gene Tree
  Gm35417
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  3
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm35417
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000120580 (Evidence)
• NCBI Gene
  102638990

Representative Sequences			Length	Strain/Species
genomic	102638990	NCBI Gene Model | MGI Sequence Detail	25867	C57BL/6J
transcript	XR_377956	RefSeq | MGI Sequence Detail	537	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for Gm35417:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62395	Chr6:108805342-108805345 (-)	-107 bp