Wdr97 Gene Detail

Summary

• Symbol
  Wdr97
• Name
  WD repeat domain 97
• Synonyms
  Gm35339

• Feature Type
  protein coding gene
• IDs
  MGI:5594498
  NCBI Gene: 102638882
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:76238649-76249141 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  230 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594498	protein coding gene	Chr15:76238632-76249401 (+)
129S1/SvImJ	ENSMUSG00200050455	protein coding gene	Chr15:73352829-73363597 (+)
A/J	ENSMUSG00195050256	protein coding gene	Chr15:73327289-73338067 (+)
AKR/J	ENSMUSG00220047498	protein coding gene	Chr15:73338309-73349077 (+)
BALB/cJ	ENSMUSG00180051575	protein coding gene	Chr15:73152436-73163215 (+)
C3H/HeJ	ENSMUSG00175051799	protein coding gene	Chr15:73515861-73526639 (+)
C57BL/6NJ	ENSMUSG00215048115	protein coding gene	Chr15:73244659-73255428 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040000	protein coding gene	Chr15:72857895-72868652 (+)
CBA/J	ENSMUSG00210037036	protein coding gene	Chr15:73291100-73301879 (+)
DBA/2J	ENSMUSG00185048388	protein coding gene	Chr15:73268271-73279039 (+)
FVB/NJ	ENSMUSG00205049309	protein coding gene	Chr15:73020552-73031330 (+)
JF1/MsJ	ENSUMUG00000051476	protein coding gene	Chr15:72918781-72929521 (+)
LP/J	ENSMUSG00230052458	protein coding gene	Chr15:76633792-76644570 (+)
NOD/ShiLtJ	ENSMUSG00190051830	protein coding gene	Chr15:73273171-73283899 (+)
NZO/HlLtJ	ENSMUSG00225050055	protein coding gene	Chr15:76938329-76949060 (+)
PWK/PhJ	ENSLUMG00010047700	protein coding gene	Chr15:73210726-73221446 (+)
SPRET/EiJ	ENSMSPG00010043620	protein coding gene	Chr15:74817140-74827847 (+)
WSB/EiJ	ENSIUOG00005036371	protein coding gene	Chr15:73331089-73341863 (+)

Homology

• Human Ortholog
  WDR97, WD repeat domain 97

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  WDR97, WD repeat domain 97
  
• Synonyms
  KIAA1875
• Links
  HGNC:26959

  NCBI Gene ID: 340390

  UniProt: A6NE52

  
  
• Chr Location
  8q24.3; chr8:144107726-144118328 (+)  GRCh38

---

• MGI Vertebrate Homology
  Wdr97 stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: WDR97
• Gene Tree
  Wdr97
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  3
• Genomic Mutations
  3 involving Wdr97
• Find Mice (IMSR)
  22 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  12
• UniProt
  1

• Ensembl
  ENSMUSG00000109179 (Evidence)
• NCBI Gene
  102638882

Representative Sequences			Length	Strain/Species
genomic	102638882	NCBI Gene Model | MGI Sequence Detail	10493	C57BL/6J
transcript	NM_001378250	RefSeq | MGI Sequence Detail	6292	ZRU/MplStud
polypeptide	NP_001365179	RefSeq | MGI Sequence Detail	1664	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR016024 Armadillo-type fold
  IPR001680 WD40 repeat
  IPR019775 WD40 repeat, conserved site
  IPR036322 WD40-repeat-containing domain superfamily
  IPR015943 WD40/YVTN repeat-like-containing domain superfamily
• GlyGen
  A0A140LHH9 1 site

Other
Accession IDs

MGI:7466656

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Wdr97:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131785	Chr15:76238649-76238668 (+)	10 bp
Tssr131786	Chr15:76238673-76238692 (+)	34 bp
Tssr131787	Chr15:76238697-76238703 (+)	51 bp