Gm35330 Gene Detail

Summary

• Symbol
  Gm35330
• Name
  predicted gene, 35330

• Feature Type
  lncRNA gene
• IDs
  MGI:5594489
  NCBI Gene: 102638869
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:5740820-5774644 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  941 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594489	lncRNA gene	Chr13:5589278-5895844 (-)
129S1/SvImJ	ENSMUSG00200006593	lncRNA gene	Chr13:2756024-2943613 (-)
A/J	ENSMUSG00195013593	lncRNA gene	Chr13:2164369-2351989 (-)
AKR/J	ENSMUSG00220013295	lncRNA gene	Chr13:2459223-2644635 (-)
BALB/cJ	ENSMUSG00180010497	lncRNA gene	Chr13:2576534-2764131 (-)
C3H/HeJ	ENSMUSG00175008917	lncRNA gene	Chr13:2611890-2797306 (-)
C57BL/6NJ	ENSMUSG00215023500	lncRNA gene	Chr13:2831777-3017219 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026012	lncRNA gene	Chr13:2844820-3035567 (-)
CBA/J	ENSMUSG00210023041	lncRNA gene	Chr13:2150562-2335988 (-)
DBA/2J	ENSMUSG00185025772	lncRNA gene	Chr13:2838355-3023802 (-)
FVB/NJ	ENSMUSG00205024503	lncRNA gene	Chr13:2580988-2773548 (-)
JF1/MsJ	ENSUMUG00000011985	lncRNA gene	Chr13:2857448-3054943 (-)
LP/J	ENSMUSG00230007621	lncRNA gene	Chr13:12312190-12509672 (-)
NOD/ShiLtJ	ENSMUSG00190014474	lncRNA gene	Chr13:2303687-2489087 (-)
NZO/HlLtJ	ENSMUSG00225034704	lncRNA gene	Chr13:6217448-6414941 (-)
PWK/PhJ	ENSLUMG00010017135	lncRNA gene	Chr13:2209562-2405211 (-)
SPRET/EiJ	ENSMSPG00010026013	lncRNA gene	Chr13:2192770-2387450 (-)
WSB/EiJ	ENSIUOG00005023687	lncRNA gene	Chr13:2185993-2371476 (-)

Homology

• Gene Tree
  Gm35330
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  88
• RefSeq
  4

• Ensembl
  ENSMUSG00000114053 (Evidence)
• NCBI Gene
  102638869

Representative Sequences			Length	Strain/Species
genomic	102638869	NCBI Gene Model | MGI Sequence Detail	33825	C57BL/6J
transcript	XR_873112	RefSeq | MGI Sequence Detail	480	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35330:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121308	Chr13:5774438-5774457 (-)	196 bp