Gm35309 Gene Detail

Summary

• Symbol
  Gm35309
• Name
  predicted gene, 35309
• Synonyms
  Gm44912

• Feature Type
  lncRNA gene
• IDs
  MGI:5594468
  NCBI Gene: 102638841
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:117928434-117931820 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  226 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594468	lncRNA gene	Chr7:117928434-117948811 (+)
129S1/SvImJ	ENSMUSG00200022730	lncRNA gene	Chr7:104435274-104435918 (+)
A/J	ENSMUSG00195041462	lncRNA gene	Chr7:108982825-108983460 (+)
AKR/J	ENSMUSG00220027254	lncRNA gene	Chr7:102423167-102423802 (+)
BALB/cJ	ENSMUSG00180033290	lncRNA gene	Chr7:105646126-105646761 (+)
C3H/HeJ	ENSMUSG00175026918	lncRNA gene	Chr7:106347714-106348358 (+)
C57BL/6NJ	ENSMUSG00215040968	lncRNA gene	Chr7:105594486-105595121 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045023	lncRNA gene	Chr7:108934076-108934711 (+)
CBA/J	ENSMUSG00210024928	lncRNA gene	Chr7:106071135-106071779 (+)
DBA/2J	ENSMUSG00185022252	lncRNA gene	Chr7:110421647-110422291 (+)
FVB/NJ	ENSMUSG00205049436	lncRNA gene	Chr7:106056281-106056916 (+)
JF1/MsJ	ENSUMUG00000051992	lncRNA gene	Chr7:115483441-115484085 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190030109	lncRNA gene	Chr7:106274176-106274811 (+)
NZO/HlLtJ	ENSMUSG00225040625	lncRNA gene	Chr7:114792114-114792749 (+)
PWK/PhJ	ENSLUMG00010013584	lncRNA gene	Chr7:104619129-104619773 (+)
SPRET/EiJ	ENSMSPG00010009232	lncRNA gene	Chr7:105833066-105833704 (+)
WSB/EiJ	ENSIUOG00005012180	lncRNA gene	Chr7:106937887-106938522 (+)

Homology

• Gene Tree
  Gm35309
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000108856 (Evidence)
• NCBI Gene
  102638841

Representative Sequences			Length	Strain/Species
genomic	102638841	NCBI Gene Model | MGI Sequence Detail	3387	C57BL/6J
transcript	XR_869899	RefSeq | MGI Sequence Detail	1454	C57BL/6J

Other
Accession IDs

MGI:5753488

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm35309:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68713	Chr7:117928676-117928688 (+)	248 bp