Gm35288 Gene Detail

Summary

• Symbol
  Gm35288
• Name
  predicted gene, 35288

• Feature Type
  lncRNA gene
• IDs
  MGI:5594447
  NCBI Gene: 102638812
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:62205784-62243931 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1320 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594447	lncRNA gene	Chr9:62205784-62243931 (+)
129S1/SvImJ	ENSMUSG00200036228	lncRNA gene	Chr9:59326081-59364363 (+)
A/J	ENSMUSG00195041840	lncRNA gene	Chr9:59029188-59067684 (+)
AKR/J	ENSMUSG00220030617	lncRNA gene	Chr9:59175346-59213522 (+)
BALB/cJ	ENSMUSG00180020454	lncRNA gene	Chr9:59153971-59192129 (+)
C3H/HeJ	ENSMUSG00175022003	lncRNA gene	Chr9:59160784-59199268 (+)
C57BL/6NJ	ENSMUSG00215034834	lncRNA gene	Chr9:59141112-59179270 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022070	lncRNA gene	Chr9:59079008-59120391 (+)
CBA/J	ENSMUSG00210041044	lncRNA gene	Chr9:59255503-59293940 (+)
DBA/2J	ENSMUSG00185044299	lncRNA gene	Chr9:59280273-59318712 (+)
FVB/NJ	ENSMUSG00205043562	lncRNA gene	Chr9:59598234-59636724 (+)
JF1/MsJ	ENSUMUG00000048538	lncRNA gene	Chr9:59326483-59364651 (+)
LP/J	ENSMUSG00230040148	lncRNA gene	Chr9:59525448-59563735 (+)
NOD/ShiLtJ	ENSMUSG00190044121	lncRNA gene	Chr9:59357908-59396402 (+)
NZO/HlLtJ	ENSMUSG00225028451	lncRNA gene	Chr9:59583838-59622313 (+)
PWK/PhJ	ENSLUMG00010040283	lncRNA gene	Chr9:59283212-59327743 (+)
SPRET/EiJ	ENSMSPG00010027490	lncRNA gene	Chr9:60363723-60402259 (+)
WSB/EiJ	ENSIUOG00005040209	lncRNA gene	Chr9:58767553-58805833 (+)

Homology

• Gene Tree
  Gm35288
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111193 (Evidence)
• NCBI Gene
  102638812

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111193	Ensembl Gene Model | MGI Sequence Detail	38148	C57BL/6J
transcript	ENSMUST00000216565	Ensembl | MGI Sequence Detail	2731	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;