Gm35287 Gene Detail

Summary

• Symbol
  Gm35287
• Name
  predicted gene, 35287

• Feature Type
  lncRNA gene
• IDs
  MGI:5594446
  NCBI Gene: 102638811
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:25365316-25368560 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594446	lncRNA gene	Chr2:25365223-25385699 (-)
129S1/SvImJ	ENSMUSG00200053136	lncRNA gene	Chr2:22349464-22352565 (-)
A/J	ENSMUSG00195051110	lncRNA gene	Chr2:22439706-22442814 (-)
AKR/J	ENSMUSG00220053591	lncRNA gene	Chr2:22557533-22560641 (-)
BALB/cJ	ENSMUSG00180054304	lncRNA gene	Chr2:22451114-22454215 (-)
C3H/HeJ	ENSMUSG00175053752	lncRNA gene	Chr2:22415267-22418368 (-)
C57BL/6NJ	ENSMUSG00215050532	lncRNA gene	Chr2:22473996-22477098 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053463	lncRNA gene	Chr2:22200029-22203121 (-)
CBA/J	ENSMUSG00210017667	lncRNA gene	Chr2:22454250-22457351 (-)
DBA/2J	ENSMUSG00185052852	lncRNA gene	Chr2:22353909-22357017 (-)
FVB/NJ	ENSMUSG00205050693	lncRNA gene	Chr2:22208086-22211187 (-)
JF1/MsJ	ENSUMUG00000055990	lncRNA gene	Chr2:22268943-22272044 (-)
LP/J	ENSMUSG00230046326	lncRNA gene	Chr2:24285454-24288555 (-)
NOD/ShiLtJ	ENSMUSG00190053232	lncRNA gene	Chr2:22444772-22447880 (-)
NZO/HlLtJ	ENSMUSG00225011473	lncRNA gene	Chr2:32035880-32038981 (-)
PWK/PhJ	ENSLUMG00010052965	lncRNA gene	Chr2:22366460-22369564 (-)
SPRET/EiJ	ENSMSPG00010046948	lncRNA gene	Chr2:23053390-23056480 (-)
WSB/EiJ	ENSIUOG00005052749	lncRNA gene	Chr2:22311907-22315007 (-)

Homology

• Gene Tree
  Gm35287
  

Sequences &
Gene Models

• All Sequences
  69
• RefSeq
  3

• Ensembl
  ENSMUSG00000120226 (Evidence)
• NCBI Gene
  102638811

Representative Sequences			Length	Strain/Species
genomic	102638811	NCBI Gene Model | MGI Sequence Detail	3245	C57BL/6J
transcript	XR_374157	RefSeq | MGI Sequence Detail	695	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35287:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23006	Chr2:25368362-25368368 (-)	195 bp
Tssr23005	Chr2:25368107-25368127 (-)	443 bp
Tssr23004	Chr2:25368087-25368106 (-)	463 bp
Tssr23003	Chr2:25368072-25368084 (-)	482 bp